GgaEX1002620 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NWS8]
Coordinates
chr2:42171403-42172690:+
Coord C1 exon
chr2:42171403-42171439
Coord A exon
chr2:42172083-42172094
Coord C2 exon
chr2:42172197-42172690
Length
12 bp
Sequences
Splice sites
3' ss Seq
TCTCCGTTTCTTCATTCCAGCTT
3' ss Score
9.45
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CCTTGTGAACTTGTGAATTTTACACGAAAAAACTGCC
Seq A exon
CTTGTTCATCAG
Seq C2 exon
ATACAGACATCTGTCCAGTTTATCCAACGGAGGTGGTGTTTGCCCTTGATATGTCTGAAGGTGTTACTCCAGCTGCATTTGAACGAATGAGAAACATTGTTATGTCACTGCTGAAGACCATTAAGATCAGTGAAAGCAATTGCCCAACAGGCGCCCGTGTTTCCATCGTTTCTTTCAATACCAACATACGCTATCTCATTCGTTTCTCAGAATTCCAAAAACACAACTTGCTTCTACAGGCAGTCCAGAGAATACCTCTAGAGAGATCTACTGGAAAACGTAGTATTGGGACAGCTATGAGATTTGTTGCAAGAAATGTCTTCAAACGGGTTCGTCAGGGCATCCTCACAAGAAAAGTTGCCATATTTTTTGCCAGTGGTCCATCTCAGGAGGATGTGGTCGAAAGCACAGCTGTACTTGAGTTGAGCGCCTGGGATATCACTCCAGTGGTTATTGCCTTCACTGAATTGCCAAATGTCAGACGTGCCTTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011567-MICROEX4
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009223=VWA=PU(86.0=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAACTTGTGAATTTTACACGA
R:
GCTGGAGTAACACCTTCAGACA
Band lengths:
107-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]