MmuEX0012340 @ mm9
Exon Skipping
Gene
ENSMUSG00000032572 | Col6a4
Description
collagen, type VI, alpha 4 [Source:MGI Symbol;Acc:MGI:1915803]
Coordinates
chr9:105915908-105918647:-
Coord C1 exon
chr9:105918518-105918647
Coord A exon
chr9:105916213-105916224
Coord C2 exon
chr9:105915908-105916128
Length
12 bp
Sequences
Splice sites
3' ss Seq
CCGTGTCTTTTCCCTTCCAGCTT
3' ss Score
10.96
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AAGTTAAGTAGTTTGAAAGGCACACCATCTCAATACTGAAGAAAAAGTCTACCATACAAGGCTGGATCCCGCAACGTATTGCCATACTCACATACCCATGAGCCTTGGTCCCTGAAACAGGGCATGGGAA
Seq A exon
CTTGCTCAACAG
Seq C2 exon
GTATTTCCAGGTGCCCAGCATTCCCAACAGAAGTGGTCTTCACCTTGGACATGTCCAACGATGTCGCCCCATCAGACTTTGAGAGGATGAGAAACATTTTATTATCTCTGCTGATGAAGCTGGAAATGTGCGAGAGCAACTGTCCCACTGGTGCCCGAGTGGCCATTGTTTCCTACAACACGAGGACAGATTACCTAGTGCGCTTGTCAGACCATCGGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032572-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0009223=VWA=PU(86.0=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTTGGTCCCTGAAACAG
R:
GCGACATCGTTGGACATGTCC
Band lengths:
98-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: