DreEX0023488 @ danRer10
Exon Skipping
Gene
ENSDARG00000079752 | col6a6
Description
collagen, type VI, alpha 6 [Source:ZFIN;Acc:ZDB-GENE-041111-303]
Coordinates
chr16:36752688-36753625:+
Coord C1 exon
chr16:36752688-36752724
Coord A exon
chr16:36752821-36752832
Coord C2 exon
chr16:36753132-36753625
Length
12 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTCTTATTTAACAGTGT
3' ss Score
9.57
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GACTGTCAGCTGATCTCATATGTTCGAGACAACTGTA
Seq A exon
TGTGCTGCAAAG
Seq C2 exon
ACAACATAAAATGTCCGGCATACCCCACTGATCTTGTGATTGGCATGGACATGTCTGAAGATGTGACCCCTCAAGGCTTTGAGCGCATGCGTTCTGTGGTCCTCAGACTGCTGGACAACATGAAAATTGCAGAGAGTAGCTGCCCGACAGGGGCTCGAGTGGCTCTGGTGTCCTACAGCTCATTCACCAAATACCTGATCCGCTTTAACGACTACCACCGCAAGAAGCAGCTTATCGATGCCGTCAACAACATCGCCCTGGAACGCACTTCAAATCGCCGCAACATTGGCGCTGCCATGCGGTTTGTGGGCAGAAATGTTCTGAAGCGAGTGCGAAAAGGCATCCTGATGAGGAAGGTTGCCATTTTCCTCACTGCTGGAGAATCTCAAGATTCGATATCTCTCACCACTGCCATTCTAGAGTACAAAGCCCTGAATATTAAACTTGGGGTCATTGCTCTGAGGAATGTCCCTGCTATCAGGAGAGCTTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079752-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.006
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009223=VWA=PU(87.0=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGATCTCATATGTTCGAGACA
R:
AGCCTTGAGGGGTCACATCTT
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]