MmuEX0012340 @ mm10
Exon Skipping
Gene
ENSMUSG00000032572 | Col6a4
Description
collagen, type VI, alpha 4 [Source:MGI Symbol;Acc:MGI:1915803]
Coordinates
chr9:106013304-106016532:-
Coord C1 exon
chr9:106016496-106016532
Coord A exon
chr9:106013882-106013893
Coord C2 exon
chr9:106013304-106013797
Length
12 bp
Sequences
Splice sites
3' ss Seq
CCGTGTCTTTTCCCTTCCAGCTT
3' ss Score
10.96
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
CCTTGTGAAATTGTTGACTTCGTGCGAGGAAACTGCC
Seq A exon
CTTGCTCAACAG
Seq C2 exon
GTATTTCCAGGTGCCCAGCATTCCCAACAGAAGTGGTCTTCACCTTGGACATGTCCAACGATGTCGCCCCATCAGACTTTGAGAGGATGAGAAACATTTTATTATCTCTGCTGATGAAGCTGGAAATGTGCGAGAGCAACTGTCCCACTGGTGCCCGAGTGGCCATTGTTTCCTACAACACGAGGACAGATTACCTAGTGCGCTTGTCAGACCATCGGGGAAAAGCTGCCCTTCTGCAGGCTGTCAGGAAAATCCCCCTGGAACGCTCATCTGGGTCTCGGAACCTTGGGGCCACTATGAGGTTTGTGGCTAGACACGTATTCAAACGTGTACGCTCAGGCCTTCTGGTGAGGAAGGTGGCCGTGTTCTTCCAGGCAGGTAGGAACTATGACACAGCCTCTGTCAGCACAGCCACGTTGGAGCTCCACGCAGCGGACATTGCTACAGCAGTTGTGACCTTCACAGAGGAGCACAACCTCCCAGAGGCAGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032572-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.001
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009223=VWA=PU(86.0=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTCGTGCGAGGAAACTG
R:
CTCAAAGTCTGATGGGGCGAC
Band lengths:
106-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types