RnoEX0023503 @ rn6
Exon Skipping
Gene
ENSRNOG00000023007 | Col6a6
Description
collagen type VI alpha 6 chain [Source:RGD Symbol;Acc:1309172]
Coordinates
chr8:114372834-114378622:-
Coord C1 exon
chr8:114378586-114378622
Coord A exon
chr8:114375964-114375975
Coord C2 exon
chr8:114372834-114373327
Length
12 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGTTCTTCCTCGCAGCTG
3' ss Score
11.75
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
ACATGTGACCTCATTCAGTATGTGCGGGAACACAGTC
Seq A exon
CTGTCAGACACG
Seq C2 exon
GAAAACCTGAGTGCCCAGTGCATCCAACTGAGTTGGTGTTTGTCCTGGACCAGTCCCGGGATGTCACAGAACAGGACTTTGAGCGGATGAAGGGGATGATGGCCTCCTTAGTTAGGGACATCAAAGTTAGGGATGCCAGCTGCCCCGTGGGTGCCCGCGTTGCCATCCTAGCCTACAACTCCCACACCAGGCACCTCATCCGCTTCTCGGATGCCTACAGGAAGGACCAGCTGCTCAGGGAAATTAAAGCTCTTCCTTACGAGAAATCCTCCGACAGCAGGGAGATTGGCAAAGCCATGAGGTTTATCTCCAGGAATGTCTTCAAGAGAACCCTCCCAGGGGCTCACGTGAGAAGAATCGCCACGTTCTTTAGCAGTGGCCAGTCAGCCGATGTCCAGTCCATTACCACAGCTGCCATGGAGTTCAGTGCCCTGGACATCATACCAGTGGTGATTGCATTCAGCAACGTGCCCTCGGTCAAGCGTGCCTTTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023007-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=1.000 C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009223=VWA=PU(92.8=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCATTCAGTATGTGCGGG
R:
GTCCTGTTCTGTGACATCCCG
Band lengths:
107-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]