RnoEX0023500 @ rn6
Exon Skipping
Gene
ENSRNOG00000023007 | Col6a6
Description
collagen type VI alpha 6 chain [Source:RGD Symbol;Acc:1309172]
Coordinates
chr8:114363036-114366552:-
Coord C1 exon
chr8:114366456-114366552
Coord A exon
chr8:114365038-114365147
Coord C2 exon
chr8:114363036-114363704
Length
110 bp
Sequences
Splice sites
3' ss Seq
ACCCTTGTTTTGTCTCACAGGCA
3' ss Score
11.2
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
ATTGATGACACTGGTACATTCCAAGTCCTTGTGGTTCCCTCCAGGCCTGACCAAGTGCCAGCGTTAGAGAGACTCCAGCGGTGCACTTTCTGCTATG
Seq A exon
GCATATAATGGAAGATATTTTGGCTGTCATTTCCTGCAATTAAAAACCCCACAAAACAGAGCAAATGGGCAGCCTGCTGTCCCTGATTAAAGAAACAGCTCTGCACACAG
Seq C2 exon
ACCTATGCAAGCCAGATGCTTCTTGTGACCAAGCCAAACCCCCCATTCAGTCCTACCTGGATGCTGCATTCCTGCTGGATAGCTCCTGGCATGTGGGAGGTGCAGAATTTGAAGACATGAGAGACCTCCTGGAGGCCCTGCTAGATCACTTTGAAATCGCTTCAGAGCCAGAGACGTCTGTCACTGGAGACAGGGTGGCCCTACTGAGTCATGCTCCCGTTGACTTCCTACCCAACACCCAGAGGAGTCCCGTTAGAACTGAGTTCAACCTAACCACCTATAGCAGTAAGCACCTCATGAAGAGACACGTGGAGCAAGCAGTCCAGCAGCTGAATGGAGATGCTTTCCTTGGTCATGCCCTCAGGTGGGCACTGGACAATGTCTTTCTAAACACGCCCAATCTGAGAAGGAACAAAGTCATATTTGTGATATCTGCTGGGGAAACCAGCCACCTGGATGCGGAAACCTTAAAGAAAGAGTCCCTGCGAGCCAAATGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023007-'40-41,'40-40,41-41
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
PF0009223=VWA=PD(6.0=30.3)
A:
NO
C2:
PF0009223=VWA=WD(100=80.8)
Main Inclusion Isoform:
ENSRNOT00000056414fB3421
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTAGAGAGACTCCAGCGGT
R:
GAGCATGACTCAGTAGGGCCA
Band lengths:
252-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]