RnoEX0024324 @ rn6
Exon Skipping
Gene
ENSRNOG00000009172 | Cpvl
Description
carboxypeptidase, vitellogenic-like [Source:RGD Symbol;Acc:1563609]
Coordinates
chr4:84103755-84105271:-
Coord C1 exon
chr4:84105192-84105271
Coord A exon
chr4:84103903-84104003
Coord C2 exon
chr4:84103755-84103814
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTCCGCTGACCCAGAAA
3' ss Score
5.97
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGGGTACAGGCTTCAGCTTCACTGATCATATCCAGGGATACGCCATCGATGAGGACGATGTAGCCCAAGACTTGTACAG
Seq A exon
AAAAGAAGATGGCTGTTCTCTAATTTCCCACGTCTCAAGATTCCAACACTTGTGTTCCATTTCCACCAGGGTTACCCAGGTTCCTACACCTCTGCACCCAG
Seq C2 exon
GCACAACTGTGGTGCCTGTCCCCAGAAGCTACTCAAGCACCCACCACCACCAATGACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009172-'13-11,'13-10,14-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=FE(19.5=100)
A:
PF0045017=Peptidase_S10=PD(9.8=37.1)
C2:
PF0045017=Peptidase_S10=PD(1.6=9.5),PF0045017=Peptidase_S10=PU(1.7=23.8)
Main Inclusion Isoform:
ENSRNOT00000012196fB3552
Main Skipping Isoform:
ENSRNOT00000012196fB3553
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGTACAGGCTTCAGCTTC
R:
GTGTCATTGGTGGTGGTGGG
Band lengths:
139-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]