RnoEX0024326 @ rn6
Exon Skipping
Gene
ENSRNOG00000009172 | Cpvl
Description
carboxypeptidase, vitellogenic-like [Source:RGD Symbol;Acc:1563609]
Coordinates
chr4:84100190-84104100:-
Coord C1 exon
chr4:84103903-84104100
Coord A exon
chr4:84103755-84103814
Coord C2 exon
chr4:84100190-84100256
Length
60 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTTCTCCTTGCATAGGCA
3' ss Score
8.76
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GCTGATCAGACAGAGGACTGAGGGACAGGCCTTTTGGTGGCTTCCTGGTCTTTATTTCCTGCCAAGGACATCTCTTTCTTTCTCTCCGCTGACCCAGAAAAGAAGATGGCTGTTCTCTAATTTCCCACGTCTCAAGATTCCAACACTTGTGTTCCATTTCCACCAGGGTTACCCAGGTTCCTACACCTCTGCACCCAG
Seq A exon
GCACAACTGTGGTGCCTGTCCCCAGAAGCTACTCAAGCACCCACCACCACCAATGACACT
Seq C2 exon
TGCACTGGTTCAGTTTTTCAAGTTGTTTCCTGAGTACGCAAAGAATGACTTTTATATCACTGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009172-'14-12,'14-11,15-12
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=PD(9.8=37.1)
A:
PF0045017=Peptidase_S10=PD(1.6=9.5),PF0045017=Peptidase_S10=PU(1.7=23.8)
C2:
PF0045017=Peptidase_S10=FE(5.4=100)
Main Inclusion Isoform:
ENSRNOT00000012196fB3553
Main Skipping Isoform:
ENSRNOT00000012196fB3552
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCGCTGACCCAGAAAAGA
R:
ACTTGAAAAACTGAACCAGTGCA
Band lengths:
139-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]