RnoINT0041706 @ rn6
Intron Retention
Gene
ENSRNOG00000009172 | Cpvl
Description
carboxypeptidase, vitellogenic-like [Source:RGD Symbol;Acc:1563609]
Coordinates
chr4:84100190-84105271:-
Coord C1 exon
chr4:84105192-84105271
Coord A exon
chr4:84100257-84105191
Coord C2 exon
chr4:84100190-84100256
Length
4935 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
CTCTACGCTCTCTTCCGCAGTGC
3' ss Score
9.89
Exon sequences
Seq C1 exon
GTGGGTACAGGCTTCAGCTTCACTGATCATATCCAGGGATACGCCATCGATGAGGACGATGTAGCCCAAGACTTGTACAG
Seq A exon
GTACGTCATGCAAACCGTGGCAGATGGAAAAGAATCCCATGGCAGACTCACTATGGATTGGTCCTTATTGTCCAATTTGTAAAACGAGGCAGAACATTTCTATGAGTGTGCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGTGTGTTTTGTGTGTGTGTTATATGTGTGTGTAGTGTGTGTGTTTTGTGTGTGTTGTATGTGTGTGTGTGTGGCGTGTGTGTGTGTGTGTTTGTGTGTGTGTATGTGTGTGCCTGTGTATGCACCTGTGTGTGTGCATGTGTGTGCGCCTGTGTGTGTGCATGTGTGTGTGCCTGTGTGTGTGTGTGTATGTGTATCACACACTCATGTGCATGCACTCGTTCTTCTGGTCTTCCTTACCCTGTTATTGATTATTGTTTACATGGACAGCAGACAAAGTAAACAGTGCTAAAATCATGAATGTAACCAATTGTAGTTTTACAACAATTTTCTATAAGACAATAGAGACACAACCCACATTTTCAATGTCTTAGAAGTTTCTGGTTGTTACTAAAATTCTATTTAACTTTGTTCTTGCCAGGAGATAAAGTCTTTTCCAGGAGTTTGTCTTCTTTCCCATAGCTGTTGCCTTTGTGGCTTTAGATGTATATTTTACTCTGAGGCTTCACCATGACTTTTCCAGGCTAAAAACAGTCTTTCTCCTTCATCTTGTCTTTCACTTTAAAAAAAAGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAAAGTTGTGAGCTTGGTTAAAGCATATACACATAAATTTTCCTTTCATTTTCTTGCATTCTTAACATCTATTTTTAGTGCATTTTTAAAAACTAAGCTGACCTTTCTTATTTGGTCAAATTTTTCCAAGCTATAAATTGCGAGTTAAGAACAAGTCTGAGTTCCTCCAGGACTCCTGAGCACCCTTGGATGCTCCGAGAATCTCCTAGAAGCCCCAATGCCCAGTTTCATCTGCCCGCTCTGCTGATTGCCCAGCGAGCAAACCTGGCATCTAGCAGGACTGCAAAGAGAAAGAGTATCTGAGTGACTTCCAAGTCACTTTTCTTCCTCCCAGGCTGATCAGACAGAGGACTGAGGGACAGGCCTTTTGGTGGCTTCCTGGTCTTTATTTCCTGCCAAGGACATCTCTTTCTTTCTCTCCGCTGACCCAGAAAAGAAGATGGCTGTTCTCTAATTTCCCACGTCTCAAGATTCCAACACTTGTGTTCCATTTCCACCAGGGTTACCCAGGTTCCTACACCTCTGCACCCAGGTACAGTGGTTGCTTGGGCCACATTAGCTGATCCTCCCACAGGGACCTCTTTTAGCCTCTGACGTCCAGTGTGTTTCTCCTTGCATAGGCACAACTGTGGTGCCTGTCCCCAGAAGCTACTCAAGCACCCACCACCACCAATGACACTGTGAGTTCTCCTGACTGAACATCTACCCCCCCAACCCCTCACTCCCACCATCTTTTGGCTTCATTGTTTAACTAGCAAAGACTAAAGAAATGTGTCCATCCCTTGCAAGTCAGAGTTTTGCAAGACGCACCCCCCTCCCTGAGGTGAAATGAAGGATGTTTTCAGCCAGCGGTTGACCCTGTGTGTGGATGTCATGGCTGACATGTGGTCTGTCTCCTCTTGCATGGCATGGAAAGAGAACGGGTTTCAAAGTAGCAGTTGTTTATGGCTGTTTCGGTTTCCTTTGCTTCGGGCTCTTAGAACTGGAAAATAGCTAATCAAGAGTAGTGCAGAAAACGGATTTCAGCTGTTCCTTTTACAGTTTACGCTATTCGTTTCCCTTTGTGACCGCATCCTTCTCTCCGGCTTGCCAGATGGGTGTCTGCAATCAGAAGGTTGCTTTGGACCTAGTAAATGGGCTACTGGGGGTTTAAAGAGCAGATCTTTCTTCTCCCTTTGAAAGCTCCCTTCCCCCACTAGTTCCCTTCTGAAGATGAAATTCTATTTTCCTGTGAACAGAGCCTGACCTGGGAGGAAAGGACTCCTAAAGAGCCATTTAGCATTCATCTTTCCAGTGGCTTTCTTTGTGCTCAGAAACTTTTTCGCTCACTCTCAGACACACTATGGAGGATGCCTCTGAGTCACGGTGGCGGCCCTCCTCTTGGTTTAGAAAAATGTGAATGAAATGTAGTCAGTTTGCTCTCTTGCCTGGTGCTGCTGTCCCCCTGTCTCCCTTGCCCATTGGATATATTCCTGGAGCTGGTGACATAGAAGCAGGCAGCACTCAGCCTCTGCCCTCCCAGAGCTCATGGCCTGGTAGAGCTCCTGGTTACCTCCCAGGAGTTGAATAGAGGTGGTACAAAGCTGCTCTCACCCCGTGACAGCCAGGATATCGAGAACGAGAAAGAGGAGTCGGTCGAGGCAAACTGCGTCCTTTCAAAGAGACTCTTTGGTGACATATTTCTTCCAATGAGGCATCATCTCCTGAAGTTTCAATCTCCCAATGGCCCACCAAGCTGTAAATCCAAACGTGGATTAACCCATTCCTGAAGCCAGAGGCCTTGGGAGCCGATCACCTCCCTAAAGCCCTGAGCCTTGGGGCTGATCTGTCAACTCTGGAGCTCTGCAAACCTGTCGGATCCAAACCCTTTCACTGTGGACCTCTCACTCTGAGTCCTGAGCCCCTGAATATCTCTGGAGCTCACATTGCTCCCACTCTACCAGAACTGACAGAGAGCAGCCACTGGCTCTATTGTACGTGATTGTTCCATCACTCTCTCTGCCCTACATCCACCGAAGGACCTTCCCGAAAAGTCACCCGAGGAGTAGTATTCTCCCAGCCACTCCTTCTTCAATGGCGGATCATTCTTCAACCAAACAACCTTTCACTAAAATTCCACTATGGGGAAGTACTTGGGAGAGTTCCAGCAGGGATTTATAATAGAGTCACCTGATACTGGATTTCTGTGCCAGGTGGATGTTCGTACCTGAATAAATCACACACACATTTGTGTATCGCACACACTAACATTATACTAAGCTTTGAAAGGCAAGCAGACATGAGTCCTGGTTTTATTTTAAGCACGACCTCACCACGTCATTGGGACAGTGCTTGACCTAAGTACTGTTAGATGAGTGAGGTGTGTGGCTCCAGCTACTGAATTTACCATTTTCATAGTTTGCCGCTGTGTAAGAACCGTTTACCGAAGACTTTGAGGAAAGAGTCCATGGAAAGACTGCAACGGTGAGATTAAAACAGTAATAGGTTCTCTGCGTGAGCTCTTGCTTTAGAAACCTCAGCTATGCAGGTGCTTCCCAGGCAGATGTAAGTGGAGAGATTATCTTCTTCAAATTAGGTGGCTGGATACAGCACAAGATGCCCAGTTAAATTTGAAAGTCAGATAAACAATGACTATTTCTTTATATATAAGTATCTTTCAAAGGTGGAAACTATTGAAAGAAAGACAGCCAACACAGACCTCTGGCTTCACACACACACACACACACACACACACACACACACACACACAAACATATATATACACATACATAGTATGTTCTACACAATATGTGGACATACTTATGCTTATTTATCTGAACTTTAAGTTTAATAGAACACCTTGAAATTTCATTTGCTGAACCTGTCAAGCCTAAAGGCTCCCCATCGAATACCAAGGAAGTAAGCTATAAGCTAAAACAGGAGACTTGAACTCGCTGTCCTGAATGAGCTGGTGCTGTTTCAACGAGCAGGAAGAGAGGAAAGGAAGTGTTTTTAGCCTGAAGGTTGCTGAGGGGAGGGTGGAGACTGAACTCCTCTTTTTACCCTTGTTCTAAAGCCAGTGTACTACCAGCCTTAACGTGAAAACTATCAACATGCAGCAAACTTAGTTCCCCGAAGCCACTATAAATAACAAACGGAGAGTGCACTGAAGCCCTCCAAGGTGCTTCGCAGGAGGGGTTTATGGAACCTTTGAAAATCAAGTCTAGCAGGGATCATGCTGGCCATAATGACTAAGTTTTCCTCTCTGTAACCCTTGAACTCTCTCCCACTCCTGGCCTTTCAGAACCTTGCCTTTCATCTTCCCTGGAAGGTTCATGGCTTTTAGTCCCTCAGCAGGAAGCTGGACTGGAGTGCTCTGCCTGGCTCTCTCAGGCCTCACAGCACAGGTCAAGACACTCTTAGAGTGCCTGAGTTTTAGGAGGAGGGTTTTTTTTTTTTTTTTTTTTTGATCTCTCTTTTGGAATGACCTTGGTAAAGACATTTAAAAACCAGCTAGACTTTTCTTACTATTGTGAATGTCCCGCCAGCCTATTTCAATCAGTTTCATCCTAGAACACTTCATACTGAACACTTGCAGTAAGAACACTTACTAAAGTAACCATGGGATTCTGGGTGTTTTCTTTTCCTCCTTCTTCCTCTTCCTCCTCTCCCTCTCCCTCTGCCTCCTCCCCCCTCTTCCTTCACTTCTTTTACAGCTTTGGTGCTCTTATTAAAGCACTGGCATTCTGAAAGCTCCTCTAGAAATTAGTTTGTTCGCTCACTGTGAGTGTGTGGATAAGCGATTGAACTTCCTATTTCCTCCCAGAAAGCTGGCCTAATGGCATCGTCATAAGGTTTAAATGAAAATTGCTAAACAATGTGTGGAAGCCGGCACATGGACACAAGGGAACCTCAGCAGCTAGATGACCCTGAGTGGCAGTTGCAACTTTACAAAAGTGACAGTGTGGGTGTCCAGTGTCCACACTTAGTTTGGCAGTGTCAGCCTACCTACTTGCTTTGCCTAGCCCTCCCTGTGGTATGTAGTATCATTACCCACTCGGGACTGAAACACATGCACCGGAGGAATGCACAGCACAGCGCTGTCTCCTTCCTCCAGGGTGCATGCCCCCAGCTGGTGAGGTGGGTAGCCCGCCACTCTAACTCCCTCAATCAATCCATCTCTACGCTCTCTTCCGCAG
Seq C2 exon
TGCACTGGTTCAGTTTTTCAAGTTGTTTCCTGAGTACGCAAAGAATGACTTTTATATCACTGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009172:ENSRNOT00000012196:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=FE(19.5=100)
A:
NA
C2:
PF0045017=Peptidase_S10=FE(5.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]