RnoEX0024329 @ rn6
Exon Skipping
Gene
ENSRNOG00000009172 | Cpvl
Description
carboxypeptidase, vitellogenic-like [Source:RGD Symbol;Acc:1563609]
Coordinates
chr4:84126989-84137108:-
Coord C1 exon
chr4:84136937-84137108
Coord A exon
chr4:84131399-84131744
Coord C2 exon
chr4:84126989-84127174
Length
346 bp
Sequences
Splice sites
3' ss Seq
GTCTTCTGGGACTCCCACAGAAG
3' ss Score
5.44
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCTGTCTCTCGTTTTCCAGTGCCAGAGAATGTGTGCCTTTCGGAAGAAGTCTTTACTCTCCCTCCAGGGAGGATCCTGGAGGGACACAAACAGATGGACTCTGCTGGCTATGGTTTAACAGGACTGGCTTCCATTTTGATACGTGGAGTTTAATACACTGTGGGGACTTCAG
Seq A exon
AAGTAACTGGCCACTGTCCTGATGATGCTGCATCACACTGAGTGAGACACGGAGAGGGCGTTATCTAACCAAGGCCTACTGCTGAGTTATGGTGGTGGACCTTCCCCAGGAAGACCGACTTCTCCAGATTCCATCTATCTCTGTGTATTATTCAACAATGGATCACTGGGGCAGGCTAAAGACTGTGCTCTATTGAGACCAGAGTCAGAATATCTGAAGATTATCTGAATGATCCAAGACAGGGATAGCGGAATCAGATGAGATTTGGAACCATAAATGAATCCTGGCTTCGGGCCTCAGCCCCACTCTTCATCAATGATGGGATCCTACTGATCAAGTCGGTCAG
Seq C2 exon
GCCATCGAGAAATGGTTCGTGCCCAGTGGAAGGTGATTATTTTATTGATCCTGTTGATGGTCATCCCTAGTGATGGACTATTCCACTCCATATACCGAAGTATCCTTGTTGCCCAGCCGTTCAAGGGGAATGCAGGACAGCCTCTATTTCTTAGTCCATACATCAGAACTGGGAAGATCAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009172_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCTCGTTTTCCAGTGCCA
R:
CCTCCTTGATCTTCCCAGTTCTG
Band lengths:
355-701
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]