RnoEX0024331 @ rn6
Exon Skipping
Gene
ENSRNOG00000009172 | Cpvl
Description
carboxypeptidase, vitellogenic-like [Source:RGD Symbol;Acc:1563609]
Coordinates
chr4:84119975-84137108:-
Coord C1 exon
chr4:84136937-84137108
Coord A exon
chr4:84126989-84127174
Coord C2 exon
chr4:84119975-84120093
Length
186 bp
Sequences
Splice sites
3' ss Seq
TGTCACTGCTCTCACCCTAGGCC
3' ss Score
10.45
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GCTGTCTCTCGTTTTCCAGTGCCAGAGAATGTGTGCCTTTCGGAAGAAGTCTTTACTCTCCCTCCAGGGAGGATCCTGGAGGGACACAAACAGATGGACTCTGCTGGCTATGGTTTAACAGGACTGGCTTCCATTTTGATACGTGGAGTTTAATACACTGTGGGGACTTCAG
Seq A exon
GCCATCGAGAAATGGTTCGTGCCCAGTGGAAGGTGATTATTTTATTGATCCTGTTGATGGTCATCCCTAGTGATGGACTATTCCACTCCATATACCGAAGTATCCTTGTTGCCCAGCCGTTCAAGGGGAATGCAGGACAGCCTCTATTTCTTAGTCCATACATCAGAACTGGGAAGATCAAGGAGG
Seq C2 exon
GGCAAAGGAAGAGCATGGTCAGTCCTTTCCCTGGAATGTATGACAAGAGTTATGCTGGCTACATCACGGTGAACCAGACTTACAACAGCAACCTCTTCTTCTGGTTCTTTCCAGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009172_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0045017=Peptidase_S10=PU(25.6=85.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCTCGTTTTCCAGTGCCA
R:
GGTTCACCGTGATGTAGCCAG
Band lengths:
244-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]