HsaEX6007594 @ hg38
Exon Skipping
Gene
ENSG00000106066 | CPVL
Description
carboxypeptidase, vitellogenic like [Source:HGNC Symbol;Acc:HGNC:14399]
Coordinates
chr7:29112704-29146537:-
Coord C1 exon
chr7:29146429-29146537
Coord A exon
chr7:29120893-29121071
Coord C2 exon
chr7:29112704-29112822
Length
179 bp
Sequences
Splice sites
3' ss Seq
GAATGCTGTTTTTATCCTAGACC
3' ss Score
6.74
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTGACTGGGTGGGGCTGCCTCACTTCTGCCTGATTTGGGAAGCGCTGCAAGGACAACCGGCTGGGGTCCTTGCGCGCCGCGGCTCAGGGAGGAGCACCGACTGCGCCGC
Seq A exon
ACCCTGAGAGATGGTTGGTGCCATGTGGAAGGTGATTGTTTCGCTGGTCCTGTTGATGCCTGGCCCCTGTGATGGGCTGTTTCGCTCCCTATACAGAAGTGTTTCCATGCCACCTAAGGGAGACTCAGGACAGCCATTATTTCTCACCCCTTACATTGAAGCTGGGAAGATCCAAAAAG
Seq C2 exon
GAAGAGAATTGAGTTTGGTCGGCCCTTTCCCAGGACTGAACATGAAGAGTTATGCCGGCTTCCTCACCGTGAATAAGACTTACAACAGCAACCTCTTCTTCTGGTTCTTCCCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106066-'7-22,'7-17,21-22
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0045017=Peptidase_S10=PU(17.7=96.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGCTGCCTCACTTCTG
R:
TGGGAAGAACCAGAAGAAGAGGT
Band lengths:
213-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains