MmuEX7003307 @ mm10
Exon Skipping
Gene
ENSMUSG00000052955 | Cpvl
Description
carboxypeptidase, vitellogenic-like [Source:MGI Symbol;Acc:MGI:1918537]
Coordinates
chr6:53967756-53978671:-
Coord C1 exon
chr6:53978635-53978671
Coord A exon
chr6:53974622-53974807
Coord C2 exon
chr6:53967756-53967874
Length
186 bp
Sequences
Splice sites
3' ss Seq
TGTTACTGCTCTTGCCCCAGGCC
3' ss Score
8.73
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
AACCTTATTCCTAGGAAACGCCAGAGGTCATAACCAG
Seq A exon
GCCAACAAGAAATGGTTCGTGCCAAGTGGAAGATGGTTGTTTCACTGATCTTGTTTATGGTCAGCCCTGGTGATGGACTGTTTCATGCAGTATACCGAAGTATCCTTGTTTCCCAGTCCTTCAAGGGGGATGCAGGACAGCCTCTTTTTCTTAGCCCATACATCAAAAACGGGAAGATCAAGGAGG
Seq C2 exon
GGCAAAGGAAGAGCATGGTCAGTCCGTTCCCTGGAATGAACGACAAGAGTTATGCCGGCTACATCACGGTGAACCAGACTTACAACAGCAACCTCTTCTTCTGGTTCTTTCCGGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052955-'8-4,'8-3,10-4=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0045017=Peptidase_S10=PU(24.6=82.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTATTCCTAGGAAACGCCA
R:
CGAGCCGGAAAGAACCAGAAG
Band lengths:
154-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types