HsaEX6007594 @ hg19
Exon Skipping
Gene
ENSG00000106066 | CPVL
Description
carboxypeptidase, vitellogenic-like [Source:HGNC Symbol;Acc:14399]
Coordinates
chr7:29152320-29221028:-
Coord C1 exon
chr7:29220906-29221028
Coord A exon
chr7:29160509-29160687
Coord C2 exon
chr7:29152320-29152438
Length
179 bp
Sequences
Splice sites
3' ss Seq
GAATGCTGTTTTTATCCTAGACC
3' ss Score
6.74
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCTTGATTGCTGTAAGTTGAACACGTCAGTGGCATGGGCACCAGCTGCACAACCCTAGGAGCCACCAAACACAGTATATTCTATATAAATGTTGCTGCCAGGAGCCCCAGTTCAAACTACAAT
Seq A exon
ACCCTGAGAGATGGTTGGTGCCATGTGGAAGGTGATTGTTTCGCTGGTCCTGTTGATGCCTGGCCCCTGTGATGGGCTGTTTCGCTCCCTATACAGAAGTGTTTCCATGCCACCTAAGGGAGACTCAGGACAGCCATTATTTCTCACCCCTTACATTGAAGCTGGGAAGATCCAAAAAG
Seq C2 exon
GAAGAGAATTGAGTTTGGTCGGCCCTTTCCCAGGACTGAACATGAAGAGTTATGCCGGCTTCCTCACCGTGAATAAGACTTACAACAGCAACCTCTTCTTCTGGTTCTTCCCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106066-'5-12,'5-9,11-12=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0045017=Peptidase_S10=PU(17.6=96.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATTGCTGTAAGTTGAACACGT
R:
TGGGAAGAACCAGAAGAAGAGGT
Band lengths:
234-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)