DreEX0024091 @ danRer10
Exon Skipping
Gene
ENSDARG00000056480 | cpvl
Description
carboxypeptidase, vitellogenic-like [Source:ZFIN;Acc:ZDB-GENE-031219-2]
Coordinates
chr16:20690911-20694082:+
Coord C1 exon
chr16:20690911-20691039
Coord A exon
chr16:20691329-20691517
Coord C2 exon
chr16:20693964-20694082
Length
189 bp
Sequences
Splice sites
3' ss Seq
CTTTGCTGTCGCTACTTCAGACT
3' ss Score
6.85
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GACACAGCGCCCATGTAGTCATGTGACTGCTGCAACTACAGCGTGACAACAACCTGATTTTTAGTTTACTCATGTTTCATCTGCCAGTGTAAACGGTTTCTGGATTTCTCGTTGGATTTTGGCCTTTGG
Seq A exon
ACTTCACAATGCTGAAGGAAACGCTGAGGCTGCTCTTCGTCTGGGCTGTTCTGGAGTCAGTTTGCTCACGCGGATGTTCCTCATTTTTCTGCCGCAAAACACGTCGGGTGAGCGGTTCGCGTTTTGGAGCTGACCCGGGCAAACCACTGATGCTCACCCCTTATCTGGAGCAAGGCAAGATAGAAGAAG
Seq C2 exon
CCAAAAAACTGAGTTTGGTGGGTCCCCTTCCTGGTGCCAATGTCAAGAGTTACTCTGGATATCTCACTGTGAACAAGACCTACAACAGCAACCTTTTCTTCTGGTTCTTCCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056480-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0045017=Peptidase_S10=PU(7.9=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGCCCATGTAGTCATGTG
R:
GGGCAGGGAAGAACCAGAAGA
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]