RnoEX0024330 @ rn6
Exon Skipping
Gene
ENSRNOG00000009172 | Cpvl
Description
carboxypeptidase, vitellogenic-like [Source:RGD Symbol;Acc:1563609]
Coordinates
chr4:84126989-84131744:-
Coord C1 exon
chr4:84131399-84131744
Coord A exon
chr4:84131014-84131221
Coord C2 exon
chr4:84126989-84127174
Length
208 bp
Sequences
Splice sites
3' ss Seq
TTAGTGCGTTTTTGTTACAGATG
3' ss Score
9.12
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
Exon sequences
Seq C1 exon
AAGTAACTGGCCACTGTCCTGATGATGCTGCATCACACTGAGTGAGACACGGAGAGGGCGTTATCTAACCAAGGCCTACTGCTGAGTTATGGTGGTGGACCTTCCCCAGGAAGACCGACTTCTCCAGATTCCATCTATCTCTGTGTATTATTCAACAATGGATCACTGGGGCAGGCTAAAGACTGTGCTCTATTGAGACCAGAGTCAGAATATCTGAAGATTATCTGAATGATCCAAGACAGGGATAGCGGAATCAGATGAGATTTGGAACCATAAATGAATCCTGGCTTCGGGCCTCAGCCCCACTCTTCATCAATGATGGGATCCTACTGATCAAGTCGGTCAG
Seq A exon
ATGCAAGGCAGAACCAGGTACAAATGCCATCAGGATGACTGGCAGCAGCATCTCACTTTTATCCAGAGCCTTCTAAGTTACCAAGGAAAACCCCACATGGAGCCTCCGAAGTTCTGTGGCTTTAGGTCGGGATACATCTGAATAGAATGTTCGAGAAAAAAGAACAAACAGAACCTTATTCCTAGGAAACGCCAGAGGTCATAACCAG
Seq C2 exon
GCCATCGAGAAATGGTTCGTGCCCAGTGGAAGGTGATTATTTTATTGATCCTGTTGATGGTCATCCCTAGTGATGGACTATTCCACTCCATATACCGAAGTATCCTTGTTGCCCAGCCGTTCAAGGGGAATGCAGGACAGCCTCTATTTCTTAGTCCATACATCAGAACTGGGAAGATCAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009172_MULTIEX1-2/3=1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGGCCTACTGCTGAGTT
R:
GGGCACGAACCATTTCTCGAT
Band lengths:
303-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]