RnoEX0025185 @ rn6
Exon Skipping
Gene
ENSRNOG00000054172 | Ctnnb1
Description
catenin beta 1 [Source:RGD Symbol;Acc:70487]
Coordinates
chr8:129601402-129617871:+
Coord C1 exon
chr8:129601402-129601529
Coord A exon
chr8:129609803-129610009
Coord C2 exon
chr8:129617811-129617871
Length
207 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCCCTGTATACTCAGTTT
3' ss Score
6.65
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
CGGGTGGGCGGGGCCCCTCCTCCGTGGCCCGCAGAGCCGGGGGACGCGGGACCTGGCACGCGTCCCCTCTGTCCCTCGTGGAGCACGCACAGATAGGTCTTTTTTTCCCCCCCTGCAACGATCTGACT
Seq A exon
TTTTGTTACAGACTCCAAAGGATTGCTCCTACAAGCTGCCTAGTGTTGCTGCCCAGACCTGAGCTTCTGTGAGACACCTGGCCTGCTGTTGTGCCTGCTAGACGGCTTGTGAATTATAGCAAGAATAAGCTGTCCTCTCACCAGTGCGGAGAACCAGCACAAGGGGAGCAGAGGCAGGCCAGGCTATATAGCAAGTTTCAGGTCACG
Seq C2 exon
GGTATCTGAAGCTCAGCGCACAACTGCTGTGACACCGCTTTGTGGACAATGGCTACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054172_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.400
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCGTCCCCTCTGTCC
R:
CTTGAGTAGCCATTGTCCACA
Band lengths:
133-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]