RnoEX0025175 @ rn6
Exon Skipping
Gene
ENSRNOG00000054172 | Ctnnb1
Description
catenin beta 1 [Source:RGD Symbol;Acc:70487]
Coordinates
chr8:129617279-129618785:+
Coord C1 exon
chr8:129617279-129617379
Coord A exon
chr8:129618172-129618399
Coord C2 exon
chr8:129618532-129618785
Length
228 bp
Sequences
Splice sites
3' ss Seq
GCATTAACACTGTTTTGCAGCTG
3' ss Score
6.96
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
Exon sequences
Seq C1 exon
TAGGCAAACCTCATCACAAGGGACTTCCATTTGTACTTCAGACTTTGACTTAAAGATATTCTGCTTCTTCAATAAGCTGCATAAACCACCATTCTGATCTG
Seq A exon
CTGACCTCATGGAGTTGGACATGGCCATGGAGCCAGACAGAAAGGCCGCTGTCAGCCACTGGCAGCAGCAATCTTACCTGGATTCTGGAATCCACTCTGGTGCCACCACCACAGCTCCTTCCCTGAGTGGCAAGGGCAATCCTGAGGAAGAAGATGTGGACACCTCCCAAGTCCTTTATGAGTGGGAGCAAGGCTTTTCCCAGTCCTTCACGCAAGAGCAAGTAGCTG
Seq C2 exon
ACATTGACGGTCAGTACGCCATGACTCGGGCTCAGAGGGTCCGAGCTGCCATGTTCCCTGAGACACTAGATGAGGGCATGCAGATCCCATCCACGCAGTTTGATGCCGCTCATCCCACTAATGTCCAGCGCTTGGCTGAACCGTCACAGATGCTGAAACATGCAGTTGTCAATTTGATTAACTATCAGGATGACGCGGAACTTGCCACCCGTGCAATTCCTGAGCTGACCAAACTGCTAAATGACGAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054172-'0-3,'0-1,2-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.714 C2=0.388
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF136461=HEAT_2=PU(46.1=55.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAAACCTCATCACAAGGG
R:
CAAGTTCCGCGTCATCCTGAT
Band lengths:
304-532
Functional annotations
There are 5 annotated functions for this event
PMID: 10074433
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI002616; ELM sequence: YLDSGIHS; Overlap: FULL
PMID: 11955436
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI002616; ELM sequence: YLDSGIHS; Overlap: FULL
PMID: 12820959
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI001302; ELM sequence: DSGIHS; Overlap: FULL
PMID: 19061640
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI002616; ELM sequence: YLDSGIHS; Overlap: FULL
PMID: 12417018
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis, western blot. ELM ID: ELMI002615; ELM sequence: YLDSGIHS; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]