GgaEX6019680 @ galGal4
Exon Skipping
Gene
ENSGALG00000011905 | CTNNB1
Description
catenin beta-1 [Source:RefSeq peptide;Acc:NP_990412]
Coordinates
chr2:44039548-44040716:+
Coord C1 exon
chr2:44039548-44039608
Coord A exon
chr2:44040100-44040327
Coord C2 exon
chr2:44040463-44040716
Length
228 bp
Sequences
Splice sites
3' ss Seq
TGTTCAACGATTTCTTACAGCTG
3' ss Score
6.77
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
AGTCTCTGAAAGGTAGCAGAAAAGAGTTCTGGGAGCACAGCAAGGAACATGGCAACCCAAG
Seq A exon
CTGACTTGATGGAGTTGGATATGGCCATGGAGCCAGACAGAAAAGCTGCAGTCAGTCATTGGCAGCAGCAGTCATATCTGGACTCTGGTATCCATTCCGGTGCCACGACAACTGCTCCCTCTTTGAGTGGCAAAGGAAATCCTGAAGAGGAAGATGTGGACACAACGCAAGTCCTGTATGAGTGGGAGCAAGGGTTCTCTCAGTCCTTTACCCAGGAGCAAGTTGCTG
Seq C2 exon
ATATTGATGGTCAATATGCAATGACTAGAGCTCAGAGAGTGCGTGCAGCTATGTTCCCCGAAACACTGGATGAAGGAATGCAAATCCCATCCACACAATTTGATGCTGCCCATCCAACTAATGTGCAGCGCCTGGCTGAGCCATCCCAGATGCTAAAACATGCTGTTGTTAATTTGATAAACTATCAGGATGATGCTGAACTTGCAACTCGTGCAATCCCAGAACTGACCAAACTGTTGAATGATGAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011905-'16-15,'16-14,17-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.701 C2=0.388
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF136461=HEAT_2=PU(46.1=55.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCTGGGAGCACAGCAAG
R:
CTGGTCCTCATCATTCAACAGT
Band lengths:
292-520
Functional annotations
There are 5 annotated functions for this event
PMID: 10074433
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI002616; ELM sequence: YLDSGIHS; Overlap: FULL
PMID: 11955436
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI002616; ELM sequence: YLDSGIHS; Overlap: FULL
PMID: 12820959
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI001302; ELM sequence: DSGIHS; Overlap: FULL
PMID: 19061640
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI002616; ELM sequence: YLDSGIHS; Overlap: FULL
PMID: 12417018
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis, western blot. ELM ID: ELMI002615; ELM sequence: YLDSGIHS; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]