BtaEX6093584 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016420 | CTNNB1
Description
Bos taurus catenin (cadherin-associated protein), beta 1, 88kDa (CTNNB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076141]
Coordinates
chr22:13875959-13877142:+
Coord C1 exon
chr22:13875959-13876019
Coord A exon
chr22:13876468-13876695
Coord C2 exon
chr22:13876889-13877142
Length
228 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTTTTTTTTATAGCTG
3' ss Score
10.2
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GGTCTCTGAAGTACACCATACTACCTTTTTGAAAATCTTGCGTGGACAATGGCTACCCAAG
Seq A exon
CTGATTTGATGGAGCTGGACATGGCCATGGAGCCAGACAGAAAAGCAGCCGTCAGTCACTGGCAGCAGCAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACCACCACAGCTCCTTCTCTGAGCGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCACCCAAGTCCTGTATGAGTGGGAACAGGGGTTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTG
Seq C2 exon
ATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTGAGAGCTGCTATGTTCCCTGAGACGCTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCCGCTCATCCCACTAACGTCCAGCGTCTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTAATTAACTATCAAGATGATGCAGAACTTGCCACACGTGCAATCCCTGAATTGACAAAACTGCTGAATGATGAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016420-'13-10,'13-9,16-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.701 C2=0.388
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF136461=HEAT_2=PU(46.1=55.3)
Main Skipping Isoform:
ENSBTAT00000021838fB1957
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTTTTGAAAATCTTGCGTGGA
R:
CTGGTCCTCATCATTCAGCAGT
Band lengths:
293-521
Functional annotations
There are 5 annotated functions for this event
PMID: 10074433
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI002616; ELM sequence: YLDSGIHS; Overlap: FULL
PMID: 11955436
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI002616; ELM sequence: YLDSGIHS; Overlap: FULL
PMID: 12820959
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI001302; ELM sequence: DSGIHS; Overlap: FULL
PMID: 19061640
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI002616; ELM sequence: YLDSGIHS; Overlap: FULL
PMID: 12417018
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis, western blot. ELM ID: ELMI002615; ELM sequence: YLDSGIHS; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]