DreEX6039315 @ danRer10
Exon Skipping
Gene
ENSDARG00000014571 | ctnnb1
Description
catenin (cadherin-associated protein), beta 1 [Source:ZFIN;Acc:ZDB-GENE-980526-362]
Coordinates
chr16:6296176-6297375:-
Coord C1 exon
chr16:6297331-6297375
Coord A exon
chr16:6297022-6297246
Coord C2 exon
chr16:6296176-6296429
Length
225 bp
Sequences
Splice sites
3' ss Seq
ATCCATTTTTTTATGTGCAGCTG
3' ss Score
7.19
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
ATTAGTAAGCTGTGCCCGGCTGTGAGAAAATCATGGCTACCCAGT
Seq A exon
CTGACTTGATGGAGCTGGAAATGGCCATGGATCCGGATCGCAAGGCTGCAGTCAGCCATTGGCAGCAACAGTCTTACCTGGACTCAGGAATCCACTCTGGGGCCACAACTACTGCCCCGTCCCTGAGTGGCAAAGGCAACCCGGAGGATGACGATGTGGATAATCAGGTGCTTTATGAGTGGGAGCAGGGCTTCAACCAGTCCTTCAACCAAGAGCAAGTAGCAG
Seq C2 exon
ACATCGATGGTCAATACGCCATGACCAGAGCCCAGAGAGTCCGGGCGGCCATGTTCCCGGAGACTCTCGATGAGGGCATGCAGATACCTTCCACACAGTTCGACTCTGCGCATCCCACCAATGTCCAGCGCCTGGCTGAGCCCTCGCAGATGCTCAAACATGCCGTGGTCAACCTCATCAACTACCAGGACGACGCAGAGCTGGCCACTCGTGCCATTCCAGAGCTCACCAAACTACTGAACGACGAGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014571-'9-8,'9-7,11-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.763 C2=0.412
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF136461=HEAT_2=PU(46.5=55.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTAGTAAGCTGTGCCCGGC
R:
CCTCGTCGTTCAGTAGTTTGGT
Band lengths:
294-519
Functional annotations
There are 5 annotated functions for this event
PMID: 10074433
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI002616; ELM sequence: YLDSGIHS; Overlap: FULL
PMID: 11955436
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI002616; ELM sequence: YLDSGIHS; Overlap: FULL
PMID: 12820959
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI001302; ELM sequence: DSGIHS; Overlap: FULL
PMID: 19061640
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI002616; ELM sequence: YLDSGIHS; Overlap: FULL
PMID: 12417018
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis, western blot. ELM ID: ELMI002615; ELM sequence: YLDSGIHS; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]