RnoEX0025174 @ rn6
Exon Skipping
Gene
ENSRNOG00000054172 | Ctnnb1
Description
catenin beta 1 [Source:RGD Symbol;Acc:70487]
Coordinates
chr8:129617279-129618399:+
Coord C1 exon
chr8:129617279-129617379
Coord A exon
chr8:129617811-129617871
Coord C2 exon
chr8:129618172-129618399
Length
61 bp
Sequences
Splice sites
3' ss Seq
TGATGACGGAATCTTTTCAGGGT
3' ss Score
5.56
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
TAGGCAAACCTCATCACAAGGGACTTCCATTTGTACTTCAGACTTTGACTTAAAGATATTCTGCTTCTTCAATAAGCTGCATAAACCACCATTCTGATCTG
Seq A exon
GGTATCTGAAGCTCAGCGCACAACTGCTGTGACACCGCTTTGTGGACAATGGCTACTCAAG
Seq C2 exon
CTGACCTCATGGAGTTGGACATGGCCATGGAGCCAGACAGAAAGGCCGCTGTCAGCCACTGGCAGCAGCAATCTTACCTGGATTCTGGAATCCACTCTGGTGCCACCACCACAGCTCCTTCCCTGAGTGGCAAGGGCAATCCTGAGGAAGAAGATGTGGACACCTCCCAAGTCCTTTATGAGTGGGAGCAAGGCTTTTCCCAGTCCTTCACGCAAGAGCAAGTAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054172-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.400 C2=0.714
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAAACCTCATCACAAGGG
R:
CTCCATGGCCATGTCCAACTC
Band lengths:
132-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]