GgaEX1018107 @ galGal3
Exon Skipping
Gene
ENSGALG00000011905 | CTNNB1
Description
NA
Coordinates
chr2:43458950-43472554:+
Coord C1 exon
chr2:43458950-43459005
Coord A exon
chr2:43471775-43471835
Coord C2 exon
chr2:43472327-43472554
Length
61 bp
Sequences
Splice sites
3' ss Seq
CTAATTTTGCTCTTTTTTAGAGT
3' ss Score
9.76
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
CGGCAGCAGCAGCAGCCGGAGCCCGGGGGGACGCTGCGCTCTCGCCTCCGTGCCAC
Seq A exon
AGTCTCTGAAAGGTAGCAGAAAAGAGTTCTGGGAGCACAGCAAGGAACATGGCAACCCAAG
Seq C2 exon
CTGACTTGATGGAGTTGGATATGGCCATGGAGCCAGACAGAAAAGCTGCAGTCAGTCATTGGCAGCAGCAGTCATATCTGGACTCTGGTATCCATTCCGGTGCCACGACAACTGCTCCCTCTTTGAGTGGCAAAGGAAATCCTGAAGAGGAAGATGTGGACACAACGCAAGTCCTGTATGAGTGGGAGCAAGGGTTCTCTCAGTCCTTTACCCAGGAGCAAGTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011905-'0-13,'0-11,9-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.200 C2=0.689
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCGCCTCCGTGCCAC
R:
AAAGAGGGAGCAGTTGTCGTG
Band lengths:
142-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]