MmuEX1007711 @ mm10
Exon Skipping
Gene
ENSMUSG00000006932 | Ctnnb1
Description
catenin (cadherin associated protein), beta 1 [Source:MGI Symbol;Acc:MGI:88276]
Coordinates
chr9:120933400-120950635:+
Coord C1 exon
chr9:120933400-120933638
Coord A exon
chr9:120950173-120950233
Coord C2 exon
chr9:120950522-120950635
Length
61 bp
Sequences
Splice sites
3' ss Seq
GACTTGATGGAATTTTTCAGGGT
3' ss Score
5.11
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GCGCGGCGGAACGCTCCGCGCGGAGCGGCAGCGGCAGGATACACGGTGCCGCGCCGCTTATAAATCGCTCCTTGTGCGGCGCCATCTTAAGCCCTCGCTCGGTGGCGGCCGCGTCAGCTCGTGTCCTGTGAAGCCCGCGGCCCGGGGAGGCGGAGACGGAGCACGGTGGGCGCCGAGCCGTCAGTGCAGGAGGCCGAGGCCGAGCGGGCGGCCGCGAGTGAGCAGCGCGCGGGCCTGAG
Seq A exon
GGTACCTGAAGCTCAGCGCACAGCTGCTGTGACACCGCTGCGTGGACAATGGCTACTCAAG
Seq C2 exon
CTGACCTGATGGAGTTGGACATGGCCATGGAGCCGGACAGAAAAGCTGCTGTCAGCCACTGGCAGCAGCAGTCTTACTTGGATTCTGGAATCCATTCTGGTGCCACCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006932-'6-12,'6-9,26-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.316 C2=0.709
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCTCGTGTCCTGTGAAG
R:
TGTCCAACTCCATCAGGTCAG
Band lengths:
148-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types