BtaEX6093585 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016420 | CTNNB1
Description
Bos taurus catenin (cadherin-associated protein), beta 1, 88kDa (CTNNB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076141]
Coordinates
chr22:13842703-13876695:+
Coord C1 exon
chr22:13842703-13842851
Coord A exon
chr22:13875959-13876019
Coord C2 exon
chr22:13876468-13876695
Length
61 bp
Sequences
Splice sites
3' ss Seq
ACTTTGATTAACTCTTTTAGGGT
3' ss Score
8.15
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GCAGCCGCGCTAGCCCGGCCCCGAGAGCGAAGAGCGAGGGGAGGCGGAGACGGAGCAAGGTCCGAGGAGCAGCTCCGGTCCCCGTCAAGCCGCCAACGCAGGCCGAGGACGGTCGGACTCCCGCCGCGGGAGGAACCTGTTCCCCTGAG
Seq A exon
GGTCTCTGAAGTACACCATACTACCTTTTTGAAAATCTTGCGTGGACAATGGCTACCCAAG
Seq C2 exon
CTGATTTGATGGAGCTGGACATGGCCATGGAGCCAGACAGAAAAGCAGCCGTCAGTCACTGGCAGCAGCAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACCACCACAGCTCCTTCTCTGAGCGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCACCCAAGTCCTGTATGAGTGGGAACAGGGGTTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016420-'2-9,'2-7,13-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.100 C2=0.701
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACGGAGCAAGGTCCGAG
R:
TTTTCTGTCTGGCTCCATGGC
Band lengths:
147-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]