GgaEX1018107 @ galGal4
Exon Skipping
Gene
ENSGALG00000011905 | CTNNB1
Description
catenin beta-1 [Source:RefSeq peptide;Acc:NP_990412]
Coordinates
chr2:44026723-44040327:+
Coord C1 exon
chr2:44026723-44026778
Coord A exon
chr2:44039548-44039608
Coord C2 exon
chr2:44040100-44040327
Length
61 bp
Sequences
Splice sites
3' ss Seq
CTAATTTTGCTCTTTTTTAGAGT
3' ss Score
9.76
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
CGGCAGCAGCAGCAGCCGGAGCCCGGGGGGACGCTGCGCTCTCGCCTCCGTGCCAC
Seq A exon
AGTCTCTGAAAGGTAGCAGAAAAGAGTTCTGGGAGCACAGCAAGGAACATGGCAACCCAAG
Seq C2 exon
CTGACTTGATGGAGTTGGATATGGCCATGGAGCCAGACAGAAAAGCTGCAGTCAGTCATTGGCAGCAGCAGTCATATCTGGACTCTGGTATCCATTCCGGTGCCACGACAACTGCTCCCTCTTTGAGTGGCAAAGGAAATCCTGAAGAGGAAGATGTGGACACAACGCAAGTCCTGTATGAGTGGGAGCAAGGGTTCTCTCAGTCCTTTACCCAGGAGCAAGTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011905-'0-14,'0-12,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.200 C2=0.701
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCGCCTCCGTGCCAC
R:
AAAGAGGGAGCAGTTGTCGTG
Band lengths:
142-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]