DreEX0024850 @ danRer10
Exon Skipping
Gene
ENSDARG00000023472 | ctnnb2
Description
catenin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2575]
Coordinates
chr19:48336516-48346964:-
Coord C1 exon
chr19:48346836-48346964
Coord A exon
chr19:48338914-48338963
Coord C2 exon
chr19:48336516-48336740
Length
50 bp
Sequences
Splice sites
3' ss Seq
GTGTTCATTTTTCTCTGCAGGTT
3' ss Score
12.7
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GGGAGAGCGGAGAGAACTGACGCACCGTGACCGGAGAGAATAACGAGAAACACCGGTGGATTCACTGCTTACAAGACACCAACGAGAAGGTCAGGCTCCACGGCCGCTGCACGGAGCTCTCCGGTTCAG
Seq A exon
GTTTGAAAGTCGCTCAGGCTAAAGGATTGACGCAACGATGGCTAGCCAGG
Seq C2 exon
CTGACCTGATGGAGCTGGACATGGCCATGGAGCAGGACCGTAAGGCTGCAGTGAGCCACTGGCAGCAGCAGTCCTACCTGGATTCAGGGATTCACTCGGGCGCCACCACCACTGCGCCCTCGCTCTCAGGCAAAGGAAACCCAGAGGAAGAGGATCTGGACAACCAGGTGCTGTACGAGTGGGAGCAGGGCTTCAGCCAGCCCTTCACACCTGAGCAGGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023472-'1-4,'1-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.400 C2=0.711
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAACTGACGCACCGTG
R:
ATGTCCAGCTCCATCAGGTCA
Band lengths:
142-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]