DreEX0024839 @ danRer10
Exon Skipping
Gene
ENSDARG00000014571 | ctnnb1
Description
catenin (cadherin-associated protein), beta 1 [Source:ZFIN;Acc:ZDB-GENE-980526-362]
Coordinates
chr16:6297022-6304825:-
Coord C1 exon
chr16:6304454-6304825
Coord A exon
chr16:6297331-6297375
Coord C2 exon
chr16:6297022-6297246
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTGTGTGTGTTTCAGATT
3' ss Score
12.67
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
ATTTCAGTCTTTCAGCGTGCAGCCGTCTTCAGTGCTGCTTGGATTTATATCTCTAAGTCATTGTTGTGTAAGGAAATAGCTGTTGGTTCATTTACTGTAGATATCCAGTGGTACGGGATCTAGTTTCCCTCAAGGCGGCAGGATATGGTATGGGTAGGAGTTTTTATAATGGCTCGCGCACATATGGAGTGACGCCATCTTTCCCTGTGTGCTGCTGCTGCGCGAGCGCGGAGTTCTCGCGCACACATTCACTCTCAGCAGGAGCTGCCGCGCGCTGCGGGTTGTTCTCTCACATTTTCTCAACGGATTGTCGCCATTATTCGCGTTTTACGTGCTGAAAACCGAAACAGGAATATACAGCTTTTGACACAG
Seq A exon
ATTAGTAAGCTGTGCCCGGCTGTGAGAAAATCATGGCTACCCAGT
Seq C2 exon
CTGACTTGATGGAGCTGGAAATGGCCATGGATCCGGATCGCAAGGCTGCAGTCAGCCATTGGCAGCAACAGTCTTACCTGGACTCAGGAATCCACTCTGGGGCCACAACTACTGCCCCGTCCCTGAGTGGCAAAGGCAACCCGGAGGATGACGATGTGGATAATCAGGTGCTTTATGAGTGGGAGCAGGGCTTCAACCAGTCCTTCAACCAAGAGCAAGTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014571-'1-7,'1-4,9-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.600 C2=0.763
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCTGAAAACCGAAACAGG
R:
CCCCAGAGTGGATTCCTGAGT
Band lengths:
144-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]