RnoEX0025918 @ rn6
Exon Skipping
Gene
ENSRNOG00000042224 | Cyp2j10
Description
cytochrome P450, family 2, subfamily j, polypeptide 10 [Source:RGD Symbol;Acc:1563215]
Coordinates
chr5:115031506-115076524:-
Coord C1 exon
chr5:115076424-115076524
Coord A exon
chr5:115036718-115036867
Coord C2 exon
chr5:115031506-115031682
Length
150 bp
Sequences
Splice sites
3' ss Seq
GCTGAATCTCTTCTTTCCAGGAT
3' ss Score
7.32
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
GGACCCCAAAGAGTGGGCCACCCCGGACACCTTCAACCCAGAGCACTTTTTGGAAAATGGACAGTTTAAGAAGAGAGACTCTTTCCTGCCTTTCTCAATGG
Seq A exon
GATTGATCTTCTCCAGTGGCCAGACATGGAAGGAGCAAAGGAGGTTTGCCCTGATGACTCTGAGGAACTTTGGATTGGGAAAGAAGAGCTTAGAGCAGCGAATCCAGGAGGAGGCTCACCATCTTGTGGAGGCCATAGGAGAGGAGGAAG
Seq C2 exon
CTCTACAACATGTTCCCATGGATAATCAAACATCTCCCAGGACAACACCAAACCTTGTTGGCTACCTGGGGAAAACTGAAATCATATATTGCTGATATCATTGAAAATCACCGCGAAGACTGGAACCCTGCTGAGCCGAGAGACTTCATTGATGCTTTTCTCAATGAAATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042224_MULTIEX1-13/18=12-15
Average complexity
C3
Mappability confidence:
85%=86=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=0.039 C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(8.5=100),PF0006717=p450=PU(1.9=2.9)
A:
PF0006717=p450=PD(0.2=2.0),PF0006717=p450=FE(94.3=100),PF0006717=p450=PU(3.5=3.9)
C2:
NA
Main Inclusion Isoform:
ENSRNOT00000012503fB3819
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGAGTGGGCCACCC
R:
ATGAAGTCTCTCGGCTCAGCA
Band lengths:
245-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]