DreEX6045073 @ danRer10
Exon Skipping
Gene
ENSDARG00000042953 | cyp2n13
Description
cytochrome P450, family 2, subfamily N, polypeptide 13 [Source:ZFIN;Acc:ZDB-GENE-041001-158]
Coordinates
chr20:25619237-25623181:-
Coord C1 exon
chr20:25623019-25623181
Coord A exon
chr20:25620388-25620540
Coord C2 exon
chr20:25619237-25619397
Length
153 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTTTGTCCTCTGCAGCTG
3' ss Score
11.98
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
CTCGGCCATGCCTACAACAATATCTTCAGTCTTCGATTAGGAAGTGACAAAACCGTCTTCATTACTGGTTATAAAATGGTAAAGGAGGCCCTGGTGACACAAGCTGAAAACTTTGTGGATCGGCCCAACAGTCCAGTGCTAGCACGTGTGTATTCTGGAAATG
Seq A exon
CTGGACTCTTCTTCAGTAATGGTGAGATGTGGAAGAAGCAACGACGCTTCGCTCTGTCAACACTGAGGAACTTTGGATTGGGAAAGAAAACAATGGAGCTGGCCATCTGTGAGGAGAGCCGCTTTCTTCTGGAAGAGATAGACGAACAGAAAG
Seq C2 exon
GAGCTGCTTTTGACCCAACAATCCTATTATACAATGCTGTTTCCAATATAATCTGTCAAATGGTGTTTGGCCAGAGATTTGACTATGCTGACCACCAGTTCAAAACAATGTTAAAATATATTTCTAAAAGCATTCAACTAGAAGGATCCGTTTGGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042953-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
PF0006717=p450=FE(11.2=100)
C2:
PF0006717=p450=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGTAAAGGAGGCCCTGGT
R:
TGTCCCCAAACGGATCCTTCT
Band lengths:
249-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]