GgaEX0008568 @ galGal3
Exon Skipping
Gene
ENSGALG00000006050 | F1NB14_CHICK
Description
NA
Coordinates
chr5:11499201-11503588:-
Coord C1 exon
chr5:11503447-11503588
Coord A exon
chr5:11501199-11501831
Coord C2 exon
chr5:11499201-11499530
Length
633 bp
Sequences
Splice sites
3' ss Seq
GTGTCAAAACTTTTTTTCAGGCT
3' ss Score
6.43
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATTTTCAGCCTTGATTTGGGAGGTATATCTGCTATTGTGCTGAATGGCTATGATGCAGTGAAAGAATGCCTTGTTCACCAAAGCGAAATTTTTGCAGACAGACCATCTTTTCCTTTGTTTAAGAAGCTGACAAACATGGGAG
Seq A exon
GCTTACTAAACAGCAAATATGGCAGAGGATGGACAGAACATCGCAAATTAGCTGTGAACACCTTTCGAACTTTTGGATATGGTCAAAGGTCCTTTGAACACAAAATTTCAGAAGAATCTGTGTTTTTCCTCGATGCCATTGATACCTACAAAGGCAGACCATTTGATCTTAAGCACTTGATAACAAATGCTGTTTCAAACATTACTAATTTGATTATTTTTGGAGAACGTTTTACATATGAAGATACTGAATTTCAGCACATGATTGAGATTTTCAGTGAAAATATTGAATTAGCTGCTAGTGCCTCTGTATTTTTATATAATGCTTTTCCTTGGATTGGTATCTTGCCATTTGGGAAACACCAGCAGCTGTTTAAAAATGCAGCTGAAGTCTATGACTTTCTTCATAAGCTTATAGAACGAGTCTCTGAAAATAGGAAATCCCAGTCACCTCGACACTTTATAGATGCATACTTAGATGAGATGGATTGCAACAAAAATGATCCAGAATCAACGTATTCAAGAGAAAACTTAATTTTCTCTGTTGGAGAACTCATCATAGCGGGGACGGAAACCACAACAAATGTTTTAAGATGGGCAGTGTTATTTATGGCTCTTTATCCAAACATTCAAG
Seq C2 exon
GACATGTTCAAAAAGAGATCGATTTAGTCATCGGCCCAAACAAAATGCCTGCTTTGGAAGAGAAATGTAAAATGCCATATACTGAGGCTGTTCTCCATGAAGTTCTAAGATTCTGTAATATAGTTCCACTAGGTATTTTTCACGCAACCTCCAAAGATACTGTTGTACGTGGTTACTCTATTCCTGAAGGCACTACAGTTATTACAAACCTCTACTCTGTACATTTTGATGAAAAATACTGGAACAACCCAGAAGTGTTTTTTCCTGAGAGATTTTTGGACAGCAATGGACAGTTTGTCAAGAAAGATGCATTTATTCCTTTTTCATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006050-'4-3,'4-2,5-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
PF0006717=p450=FE(46.2=100)
C2:
PF0006717=p450=FE(24.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAAATTTTTGCAGACAGACCA
R:
ACAAACTGTCCATTGCTGTCCA
Band lengths:
358-991
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]