DreEX0025460 @ danRer10
Exon Skipping
Gene
ENSDARG00000056587 | cyp2r1
Description
cytochrome P450, family 2, subfamily R, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-110114-1]
Coordinates
chr7:27421937-27424980:+
Coord C1 exon
chr7:27421937-27422078
Coord A exon
chr7:27423926-27424555
Coord C2 exon
chr7:27424654-27424980
Length
630 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTATTCTCTGTCTAGGAC
3' ss Score
9.3
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
ATTTTCAGTCTAGACCTGGGAGGAATCCCGACTGTGATTCTAAATGGTTATGATGCCATTAAAGAGTGCCTGTATCACCAAAGTGAGGTTTTTGCAGACCGCCCGTCCCTCCCTTTATTCCAGAAGATGACAAAAATGGGAG
Seq A exon
GACTTCTGAACTGCAAATACGGCCGAGGCTGGATTGAGCACCACAAACTGGCTGTGAACTGCTTCCGCTACTTTGGCACTGGCCAGCGGATGTTTGAGAGGATTTCTGAAGAGTGCCTATATTTTCTTGATGCCATTGACCAGCACCAAGGCAAGCCCTTTAACCCCAAGCATCTGGTGACCAATGCGGTGTCCAATATCACCAACCTCATCATCTTTGGCCAGCGCTTCACCTATGACGATGGGGATTTTCAGCACATGATTGAGATCTTCAGTGAGAATGTGGAGCTGGCAGCCAGCAGTTGGGCTTTCCTGTACAACGCCTTCCCCTGGATGGAGTACCTGCCCTTTGGGAAGCACCAGAGGCTGTTCCGCAATGCCAACGAGGTCTATAAGTTCCTCCTGCAAATCATCAGGCGCTTCTCGCAGGGCAGGGTTCCCCAGTCGCCGCAACATTACATTGATGCCTACTTGGACGAAATGGAGCAAAGCACCCCTGATAAAGCCACTTCTTTCTCTCAAGACAATCTGATTTTCTCAGTTGGAGAACTGATCATCGCGGGCACAGAAACCACCACTAATTGTCTGCGCTGGGCTATGCTCTACATGGCTCTGTATCCCAGGATACAAG
Seq C2 exon
AAAAGGTCCAAATGGAGATCGATAGTGTTCTGAATGGCAGACAGCCTGCTTTTGAAGACAGGCAGAGGATGCCGTATGTGGAGGCAGTGTTGCATGAAGTCCTGCGCCTCTGCAATATCGTCCCACTGGGAATCTTCCGCGCCACGTCTCAAGACGCAGTGGTGCGTGGCTACACCATTCCCAAGGGCACCATGGTCATCACTAACTTGTACTCTGTACACTTTGATGAGAAGTACTGGAGCGACCCGTCAATCTTCTGCCCAGAGCGCTTTCTAGACTGCAATGGCAAATTCATCCGACATGAAGCGTTTCTCCCCTTCTCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056587-'14-16,'14-15,17-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.4=100)
A:
PF0006717=p450=FE(46.3=100)
C2:
PF0006717=p450=FE(24.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTCCCTCCCTTTATTCCA
R:
GGAGAAACGCTTCATGTCGGA
Band lengths:
356-986
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]