GgaEX0008568 @ galGal4
Exon Skipping
Gene
ENSGALG00000006050 | CYP2R1
Description
cytochrome P450, family 2, subfamily R, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20580]
Coordinates
chr5:9964074-9970094:-
Coord C1 exon
chr5:9969953-9970094
Coord A exon
chr5:9967705-9968337
Coord C2 exon
chr5:9964074-9964811
Length
633 bp
Sequences
Splice sites
3' ss Seq
GTGTCAAAACTTTTTTTCAGGCT
3' ss Score
6.43
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATTTTCAGCCTTGATTTGGGAGGTATATCTGCTATTGTGCTGAATGGCTATGATGCAGTGAAAGAATGCCTTGTTCACCAAAGCGAAATTTTTGCAGACAGACCATCTCTTCCTTTGTTTAAGAAGCTGACAAACATGGGAG
Seq A exon
GCTTACTAAACAGCAAATATGGCAGAGGATGGACAGAACATCGCAAATTAGCTGTGAACACCTTTCGAACTTTTGGATATGGTCAAAGGTCCTTTGAACACAAAATTTCAGAAGAATCTGTGTTTTTCCTCGATGCCATTGATACCTACAAAGGCAGACCATTTGATCTTAAGCACTTGATAACAAATGCTGTTTCAAACATTACTAATTTGATTATTTTTGGAGAACGTTTTACATATGAAGATACTGAATTTCAGCACATGATTGAGATTTTCAGTGAAAATATTGAATTAGCTGCTAGTGCCTCTGTATTTTTATATAATGCTTTTCCTTGGATTGGTATCTTGCCATTTGGGAAACACCAGCAGCTGTTTAAAAATGCAGCTGAAGTCTATGACTTTCTTCATAAGCTTATAGAACGAGTCTCTGAAAATAGGAAATCCCAGTCACCTCGACACTTTATAGATGCATACTTAGATGAGATGGATTGCAACAAAAATGATCCAGAATCAACGTATTCAAGAGAAAACTTAATTTTCTCTGTTGGAGAACTCATCATAGCGGGGACGGAAACCACAACAAATGTTTTAAGATGGGCAGTGTTATTTATGGCTCTTTATCCAAACATTCAAG
Seq C2 exon
GAAGACGACACTGTCTTGGAGAACAGCTAGCTCGAATGGAACTGTTTTTGTTTTTCACTTCGTTACTACAACGATTTCACCTGCGTTTTCCTCATGGTGGGATTCCAGATCTCAAACCAAGATTAGGCATGACATTACAACCACAGCCATACCTCATTTGTGCAGAAAGACGATGAACAGAGGAGTCTAGACTGTCAGATGGAGTAAAATGGTCCAAGCAGCTGCCAAGGAGTCCCTTGCCTTCTATTTCTAAATGTATTCAAGTTGGAAGAACAAAAATGTTAATGACTTAAACTATGGTTATTTGTGCACAAGTTCATGGTTTCTTTTCACTTGGTTTTCACAAAAAAAAAAAACACAACAACACAAAAAAAAACAAAAAACTGAACAAACTCTCAACCAAGAATATAAAAGAAATCCTGTGTTTAAAGTTGACATTTCCACTCCATAAATTTGTTTTGAATCTAACTTCTCATTCAGTTTTTAATTTCTTTGCAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006050_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
PF0006717=p450=FE(46.2=100)
C2:
PF0006717=p450=PD(11.8=91.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTATTGTGCTGAATGGCT
R:
GACTCCTTGGCAGCTGCTTG
Band lengths:
349-982
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]