BtaEX0010593 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010419 | CYP2R1
Description
Bos taurus cytochrome P450, family 2, subfamily R, polypeptide 1 (CYP2R1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076267]
Coordinates
chr15:38429166-38442160:+
Coord C1 exon
chr15:38429166-38429307
Coord A exon
chr15:38439617-38440249
Coord C2 exon
chr15:38441831-38442160
Length
633 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTTATTTTTTTTAGGCT
3' ss Score
10.24
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATCTTCAGTTTGGATCTTGGAGGTATATCAGCTGTGGTTCTAAATGGCTATGATGTAGTAAAGGAATGCCTTGTTCATCAAAGTGAAATTTTTGCAGACAGACCATGTCTTCCTTTATTCATGAAGATGACAAAAATGGGAG
Seq A exon
GCTTACTGAATTCCAGATATGGCCGAGGATGGGTTGATCACAGAAAATTAGCTGTAAATAGCTTTCGCTGTTTTGGATATGGCCAGAAATCTTTTGAATCTAAAATCTTAGAAGAAACCAAATTTTTCATTGATGCTGTTGAAACATACAATGGTAGCCCTTTTGACTTAAAACAATTAGTAACAAATGCTGTTTCAAACATAACCAATCTGGTCATTTTTGGAGAACGATTCACTTATGAAGACACTGATTTTCAGCACATGATTGAGTTATTTAGTGAAAATGTGGAACTAGCTGCCAGCGCCACAGTCTTCCTCTATAATGCCTTTCCATGGATTGGCATCTTACCTTTTGGAAAACATCAACAACTGTTTAGAAATGCAGCCGTGGTCTATGACTTTCTGTCTAGGCTTATTGAAAAAGCTTCCATCAACAGAAAACCTCAGTTACCTCAGCATTTTGTTGATGCTTATTTAGATGAGATGGAAAGAAGTAAAAATGACCCATCATCTACTTTCTCCAAAGAAAACTTAATTTTCTCTGTGGGTGAACTCATCATTGCTGGAACTGAAACTACAACTAATGTGCTGCGGTGGGCAGTTCTTTTCATGGCCCTTTATCCTAACATTCAAG
Seq C2 exon
GACAAGTTCAGAAAGAGATTGACTTGATTATAGGACCCAGTGGGAAGCCTTCTTGGGATGAAAAGTGCAAAATGCCTTATACCGAGGCAGTTTTGCATGAAGTTTTAAGGTTCTGTAACATAGTGCCATTGGGGATTTTCCATGCAACCTCTGAGGATGCAGTTGTACGTGGTTATTCCATTCCTAAAGGCACAACAGTAATCACAAATCTTTATTCTGTACACTTTGATGAAAAGTATTGGAGAGACCCAGAAATATTCTATCCAGAGCGATTTTTGGACAGCAGTGGACATTTTGCCAAGAAGGAAGCTTTGATTCCCTTTTCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010419_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(55.3=100),PF0006717=p450=PU(6.8=25.0)
A:
PF0006717=p450=FE(46.0=100)
C2:
PF0006717=p450=PD(1.2=0.9),PF0006717=p450=FE(62.1=100)
Main Inclusion Isoform:
ENSBTAT00000013747fB2007
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAAATTTTTGCAGACAGACCA
R:
CCACTGCTGTCCAAAAATCGC
Band lengths:
350-983
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development