RnoEX6004433 @ rn6
Exon Skipping
Gene
ENSRNOG00000011367 | Cyp2r1
Description
cytochrome P450, family 2, subfamily r, polypeptide 1 [Source:RGD Symbol;Acc:1311866]
Coordinates
chr1:184095525-184100292:-
Coord C1 exon
chr1:184100151-184100292
Coord A exon
chr1:184096597-184097229
Coord C2 exon
chr1:184095525-184095854
Length
633 bp
Sequences
Splice sites
3' ss Seq
TTTTAATATGTTTCTTTTAGGCT
3' ss Score
8.97
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATTTTCAGTTTAGATCTTGGAGGCATATCAACTGTGGTTCTCAATGGCTATGATGTAGTAAAGGAATGCCTTGTTCATCAAAGTGAAATTTTTGCAGATAGACCATGCCTTCCTTTGTTCATGAAGATGACAAAAATGGGAG
Seq A exon
GCTTACTCAATTCCAGATATGGCAGAGGATGGATTGATCACAGAAGATTGGCTGTTAACAGCTTTCATTATTTTGGAAGTGGCCAAAAATCTTTTGAATCTAAAATCTTAGAAGAAACTTGGTCTTTAATTGATGCTATTGAAACATACAAAGGTAGACCTTTTGACCTCAAGCAACTGATAACAAATGCTGTTTCAAACATAACTAACCTTATCCTTTTTGGAGAACGATTCACTTATGAAGACACTGATTTTCAGCACATGATTGAGTTATTCAGTGAGAATGTCGAACTAGCTGCCAGTGCTCCGGTCTTCCTTTACAATGCATTTCCATGGATTGGCATCTTACCTTTCGGAAAACATCAAAGGCTATTTAGAAATGCAGATGTGGTCTATGATTTCCTCTCCAAACTTATTGAAAAAGCTGCAGTAAATAGAAAGCCTCATTTGCCTCAGAATTTTGTTGATGCCTATTTAGATGAGATGGATAAAGGTCAAAATGATCCTTTATCTACGTTCTCCAAAGAGAATCTAATTTTCTCAGTGGGTGAACTCATCATTGCTGGAACTGAAACTACAACCAATGTGCTCCGCTGGGCAGTTCTGTTCATGGCCCTTTATCCTAATATTCAAG
Seq C2 exon
GACAAGTTCATAAAGAGATTGATTTAATTATGGGACACGACAGGAGGCCTTCTTGGGAAGACAAATGCAAAATGCCTTATACTGAAGCAGTTTTGCATGAAGTTTTAAGATTCTGTAATATAGTTCCACTGGGGATTTTCCATGCAACTTCTGAAGATGCAGTTGTACGTGGCTATTCCATTCCTAAAGGCACAACAGTCATTACAAATCTTTATTCTGTTCACTTTGATGAAAAGTACTGGAAAGACCCAGACATGTTCTATCCTGAGCGATTTCTGGACAGCAGTGGATATTTTACTAAAAAGGAAGCTTTGATTCCTTTTTCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011367-'4-3,'4-2,5-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
PF0006717=p450=FE(48.7=100)
C2:
PF0006717=p450=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCAGATAGACCATGCCTTCC
R:
TCCACTGCTGTCCAGAAATCG
Band lengths:
342-975
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]