MmuEX0013357 @ mm9
Exon Skipping
Gene
ENSMUSG00000030670 | Cyp2r1
Description
cytochrome P450, family 2, subfamily r, polypeptide 1 [Source:MGI Symbol;Acc:MGI:2449771]
Coordinates
chr7:121695267-121698246:-
Coord C1 exon
chr7:121698105-121698246
Coord A exon
chr7:121696235-121696867
Coord C2 exon
chr7:121695267-121695596
Length
633 bp
Sequences
Splice sites
3' ss Seq
TTTTAATACGTTTCTTTTAGGCT
3' ss Score
7.9
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATTTTCAGTTTAGATCTTGGAGGCATATCAACTGTCGTTCTAAATGGCTATGATGTAGTAAAGGAATGCCTTGTTCATCAAAGTGAAATTTTTGCAGATAGACCATGCCTTCCTTTGTTCATGAAGATGACAAAAATGGGAG
Seq A exon
GCTTACTCAATTCCAGATATGGTAGAGGATGGATTGATCACAGAAGGTTGGCTGTTAACAGCTTTCATTATTTTGGAAGTGGCCAAAAATCTTTTGAATCTAAAATTTTAGAAGAAACTTGGTCTTTAATTGATGCTATTGAAACATACAAAGGTGGACCTTTTGACCTCAAGCAACTGATAACAAATGCTGTTTCAAACATAACTAACCTTATCCTTTTTGGAGAACGATTCACTTATGAAGACACTGATTTTCAGCACATGATTGAATTATTTAGTGAGAATGTGGAACTAGCTGCCAGTGCTCCAGTCTTCCTTTATAATGCATTTCCATGGATTGGCATCTTACCTTTTGGGAAACATCAAAGACTATTTAGAAATGCAGATGTGGTCTATGATTTCCTCTCCAGACTTATTGAAAAAGCTGCAGTCAATAGAAAGCCTCATTTACCTCACCATTTTGTTGATGCCTATTTAGATGAGATGGATCAAGGTCAAAATGATCCTTTATCTACATTTTCCAAAGAGAATCTAATTTTTTCAGTGGGTGAACTCATCATTGCTGGAACTGAAACTACAACCAATGTGCTCCGCTGGGCAATTCTTTTCATGGCCCTTTATCCTAATATTCAAG
Seq C2 exon
GACAAGTTCATAAAGAGATTGATTTAATTGTGGGCCACAACAGGAGACCTTCTTGGGAATACAAATGCAAAATGCCTTATACTGAAGCAGTTTTACATGAAGTTTTAAGATTCTGTAATATAGTTCCACTGGGAATTTTCCATGCAACTTCGGAAGATGCAGTTGTACGTGGCTATTCCATTCCTAAAGGCACAACAGTCATTACAAATCTTTATTCTGTTCACTTTGATGAAAAGTACTGGAAAGATCCAGACATGTTCTATCCTGAGCGATTTCTGGACAGCAATGGATATTTTACTAAAAAGGAAGCTTTGATTCCTTTTTCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030670-'1-7,'1-3,2-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(55.3=100),PF0006717=p450=PU(6.8=25.0)
A:
PF0006717=p450=FE(46.0=100)
C2:
PF0006717=p450=PD(1.2=0.9),PF0006717=p450=FE(62.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCAGATAGACCATGCCTTCC
R:
TCCATTGCTGTCCAGAAATCGC
Band lengths:
342-975
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: