MmuEX0013349 @ mm10
Exon Skipping
Gene
ENSMUSG00000028571 | Cyp2j13
Description
cytochrome P450, family 2, subfamily j, polypeptide 13 [Source:MGI Symbol;Acc:MGI:2385197]
Coordinates
chr4:96068184-96071707:-
Coord C1 exon
chr4:96071545-96071707
Coord A exon
chr4:96068730-96068879
Coord C2 exon
chr4:96068184-96068347
Length
150 bp
Sequences
Splice sites
3' ss Seq
GCTGAATCTCTTCTTTCCAGGAT
3' ss Score
7.32
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
TTTGTGAAGAAGTATGGGAATGTTATCAGTCTTGATTTCGGAATCAAGTCTGCAGTCATTATAAGCAGCCTGCCTTTAATCAAAGAAGCCTTTTCTCACCTGGATGAAAACTTTATAAATCGCCGTATATTTCCTCTACAAAGACAGATCTTTAATGGAAATG
Seq A exon
GATTGATCTTCTCCAGTGGCCAGACATGGAAGGAACAAAGGAGGTTTGCCCTGATGACACTGAGGAACTTTGGACTGGGAAAGAAGAGCTTAGAGCATCGAATTCAGGAGGAGGCCTCCCACCTGGTGGAGGCTATAGGGGAAGAGGAAG
Seq C2 exon
GACAGCCTTTTGATCCTCACTTCAAGATCTACAGTGCAGTTTCCAATATCATTTGCTCCATCACCTTTGGGGAACGGTTTGAGTACCATGACAGTCAGTTTCAGGAGCTGCTGCAGTTACTGGATAAAGCCATGTACTTGGGTACCACCTCCCTAATGGTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028571_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
PF0006717=p450=FE(11.0=100)
C2:
PF0006717=p450=FE(28.7=100),PF0006717=p450=PU(8.6=20.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGAATCAAGTCTGCAGTCA
R:
CAGTAACTGCAGCAGCTCCTG
Band lengths:
248-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types