Special

MmuEX0013349 @ mm9

Exon Skipping

Gene
ENSMUSG00000028571 | Cyp2j13
Description
cytochrome P450, family 2, subfamily j, polypeptide 13 [Source:MGI Symbol;Acc:MGI:2385197]
Coordinates
chr4:95734875-95738398:-
Coord C1 exon
chr4:95738236-95738398
Coord A exon
chr4:95735421-95735570
Coord C2 exon
chr4:95734875-95735038
Length
150 bp
Sequences
Splice sites
3' ss Seq
GCTGAATCTCTTCTTTCCAGGAT
3' ss Score
7.32
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
TTTGTGAAGAAGTATGGGAATGTTATCAGTCTTGATTTCGGAATCAAGTCTGCAGTCATTATAAGCAGCCTGCCTTTAATCAAAGAAGCCTTTTCTCACCTGGATGAAAACTTTATAAATCGCCGTATATTTCCTCTACAAAGACAGATCTTTAATGGAAATG
Seq A exon
GATTGATCTTCTCCAGTGGCCAGACATGGAAGGAACAAAGGAGGTTTGCCCTGATGACACTGAGGAACTTTGGACTGGGAAAGAAGAGCTTAGAGCATCGAATTCAGGAGGAGGCCTCCCACCTGGTGGAGGCTATAGGGGAAGAGGAAG
Seq C2 exon
GACAGCCTTTTGATCCTCACTTCAAGATCTACAGTGCAGTTTCCAATATCATTTGCTCCATCACCTTTGGGGAACGGTTTGAGTACCATGACAGTCAGTTTCAGGAGCTGCTGCAGTTACTGGATAAAGCCATGTACTTGGGTACCACCTCCCTAATGGTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028571-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0006717=p450=FE(11.8=100)

							
A:
PF0006717=p450=FE(11.0=100)

							
C2:
PF0006717=p450=FE(28.7=100),PF0006717=p450=PU(8.6=20.0)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000030305





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000095587, ENSMUSP00000102693
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr1:59912162-59912311 
HIGH PSI
HsaEX6031244
(CYP2J2)
Human
(hg19)
chr1:60377834-60377983 
HIGH PSI
HsaEX6031244
(CYP2J2)
Rat
(rn6)
chr5:115092607-115092756 
ALTERNATIVE
RnoEX0025923
(Cyp2j10)
Cow
(bosTau6)
chr3:86617001-86617150 
HIGH PSI
BtaEX6017455
([1])
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr8:27454474-27454623 
Zebrafish
(danRer10)
chr20:25620388-25620540 
HIGH PSI
DreEX6045073
(cyp2n13)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TCGGAATCAAGTCTGCAGTCA

				
R: 
CAGTAACTGCAGCAGCTCCTG

				
Band lengths: 
248-398

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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