RnoEX0026007 @ rn6
Exon Skipping
Gene
ENSRNOG00000032895 | Cyp4f4
Description
cytochrome P450, family 4, subfamily f, polypeptide 4 [Source:RGD Symbol;Acc:708363]
Coordinates
chr7:14905795-14906310:+
Coord C1 exon
chr7:14905795-14905928
Coord A exon
chr7:14906013-14906077
Coord C2 exon
chr7:14906228-14906310
Length
65 bp
Sequences
Splice sites
3' ss Seq
CCCTCCTGCCCCACTTACAGGTG
3' ss Score
11.2
5' ss Seq
GAGGTGCTG
5' ss Score
2.64
Exon sequences
Seq C1 exon
GGACGACCTGGCCCAGCTGCCCTTCCTGACCATGTGCATCAAGGAGAGTCTGCGACTGCATCCCCCAGTCACGGTCATCTCCCGTCGTTGTACCCAAGACATCGTGCTCCCAGATGGCCGGGTCATCCCTAAAG
Seq A exon
GTGTCATCTGCATCATCAATATTTTCGCGACCCATCACAACCCAACTGTGTGGCCCGACCCTGAG
Seq C2 exon
GTCTATGATCCCTTCCGCTTCGACCCAGAGAATATCAAGGACAGGTCACCTCTGGCTTTTATTCCCTTCTCCGCTGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032895-'12-14,'12-13,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.7=100)
A:
PF0006717=p450=FE(4.5=100)
C2:
PF0006717=p450=FE(5.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCCTGACCATGTGCATC
R:
CCAGAGGTGACCTGTCCTTGA
Band lengths:
170-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]