RnoEX0027092 @ rn6
Exon Skipping
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22115509-22119697:-
Coord C1 exon
chr3:22119610-22119697
Coord A exon
chr3:22117633-22117673
Coord C2 exon
chr3:22115509-22115580
Length
41 bp
Sequences
Splice sites
3' ss Seq
CTCTCACTCTCTTCCCCTAGGCA
3' ss Score
12.47
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
TTTATCGATGGCCGACTAGACCTTCTCAATTCCGGTGAAGGTTTCAGTGATGTCTTTGAGGAGGAGATCAGCATGGGAGAATATGCCG
Seq A exon
GCAGTGATAAACTGTACCATCAGTGGCTGTCCACAGTCCGG
Seq C2 exon
AAAGGAAGTGGAGCGATTCTGAATACTGTAAAAACAAAAGCTAACCCAGCCATGAAGACTGTCTACAAGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526-'44-61,'44-59,45-61
Average complexity
S
Mappability confidence:
100%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.117
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PD(5.9=13.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATGGCCGACTAGACCTTC
R:
CAGTCTTCATGGCTGGGTTAG
Band lengths:
145-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]