BtaEX6046063 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003610 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr11:94588534-94592885:-
Coord C1 exon
chr11:94592798-94592885
Coord A exon
chr11:94590811-94590851
Coord C2 exon
chr11:94588534-94588605
Length
41 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTCCTCTTTCCCCAGGGA
3' ss Score
12.13
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
TTTATCGATGGTAGATTAGACCTTCTCAATTCTGGCGAGGGCTTCAGTGATGTTTTTGAAGAGGAGATCAACATGAGCGAGTATGCTG
Seq A exon
GGAGTGATAAGCTATACCACCAGTGGCTCTCCACAGTCCGG
Seq C2 exon
AAAGGAAGTGGAGCAATTTTGAATACTGTAAAAACGAAAGCAAACCCGGCCATGAAGACTGTCTATAAGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003610-'48-54,'48-53,49-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PD(5.9=13.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCTCAATTCTGGCGAGGG
R:
TAGACAGTCTTCATGGCCGGG
Band lengths:
133-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]