GgaEX0001249 @ galGal4
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr17:9059199-9061484:-
Coord C1 exon
chr17:9061397-9061484
Coord A exon
chr17:9060801-9060841
Coord C2 exon
chr17:9059199-9059270
Length
41 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGTGGTTCTGTCTAGGTA
3' ss Score
9.34
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
TTCATTGATGGCCGCCTGGATCTTCTTAACTCCGGAGAGGGCTTCAGTGATGCTTTTGAAGAAGAGATAAATATGGGAGAGTATGCAG
Seq A exon
GTAGTGACAAATTGTACCTCCAGTGGCTCTCTACAGTAAGG
Seq C2 exon
AAAGGAAGTGGAGCCATTTTAAACACAGTAAAGACCAAAGCTAACCCTGCCATGAAGACTGTCTATAAGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157-'36-49,'36-48,37-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.097
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PD(6.0=13.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCGCCTGGATCTTCTTAAC
R:
CATGGCAGGGTTAGCTTTGGT
Band lengths:
133-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]