DreEX0003536 @ danRer10
Exon Skipping
Gene
ENSDARG00000014592 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr21:8362252-8369570:+
Coord C1 exon
chr21:8362252-8362339
Coord A exon
chr21:8362433-8362473
Coord C2 exon
chr21:8369500-8369570
Length
41 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTGTCTCTGTTACAGGCA
3' ss Score
11.11
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
TTTATAGATGGTCGTCTGGAGCTGCTGAACTCTGGTGAAGGGTTCAGTGATCAGTTTGAGGAGGAGATCAACATGGGAGAATATGCTG
Seq A exon
GCAGTGATAAAACGTATCATCAGTGGCTTTTCACAGTGAAG
Seq C2 exon
GCTCGACCTCCTCGGCCATTGGTGGCAAAGAGACCTCGCAGTAACATTGGTGTAGAAGGAAGCCCTGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014592_MULTIEX1-14/18=13-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PD(6.0=13.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGAACTCTGGTGAAGG
R:
TCAGGGCTTCCTTCTACACCA
Band lengths:
136-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]