RnoEX0027566 @ rn6
Exon Skipping
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80846332-80847787:-
Coord C1 exon
chr3:80847747-80847787
Coord A exon
chr3:80847147-80847213
Coord C2 exon
chr3:80846332-80846363
Length
67 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCCCCTCCCCCACAGGAG
3' ss Score
11.54
5' ss Seq
TGGGTGCAT
5' ss Score
-2.84
Exon sequences
Seq C1 exon
CCACCACTGCCAGCCGCTTCTACAGGATCGACAGGGCCCAG
Seq A exon
GAGCACCTCAACTATGTGACGGAGATTGCCCAGGATGAGATTTATATCCTAGACCCAGAGCTGCTGG
Seq C2 exon
GTCACTGCAGGGGGATGCCGCACTGCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737-'47-55,'47-54,48-55
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.468 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCCAGCCGCTTCTAC
R:
GCATCCCCCTGCAGTGAC
Band lengths:
55-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]