DreEX6100903 @ danRer10
Exon Skipping
Gene
ENSDARG00000076025 | dgkzb
Description
diacylglycerol kinase, zeta b [Source:ZFIN;Acc:ZDB-GENE-111104-4]
Coordinates
chr25:7726222-7731478:+
Coord C1 exon
chr25:7726222-7726262
Coord A exon
chr25:7726343-7726542
Coord C2 exon
chr25:7731374-7731478
Length
200 bp
Sequences
Splice sites
3' ss Seq
AGCATTGCATGTCTCCGCAGGAG
3' ss Score
8.22
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
GTACAACTGCAGATCGTTTCTACCGAATAGATCGTGGTCAG
Seq A exon
GAGCATCTAAACTATGTGTCGGAGATCTCCCAGGATGAGCTTTTCATCTTGGACCCGGAGCTGGTCACCAAGGAGACGGTGGGCACGTCGCCCGGAATGCCGGGGGCGATGGAAACGGTTGTTGGGGGATGTGGATGTTCCAACAGCACAGACCAGTTCGCTTTTCCTGCCTGCTCTCCAGGGCCTTCTCCACTCTGCAG
Seq C2 exon
GGTTAATGAAACACATGCTGAAAGCCAACCGGAAAGTGTGAGTGAAGAAATCGACATGCATGTGCAAAGTGATCCAGAAAGTCCAACAAATCTAGGCGTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076025-'28-32,'28-31,29-32=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.343 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTGCAGATCGTTTCTACCG
R:
ACACGCCTAGATTTGTTGGACT
Band lengths:
140-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]