MmuEX6103066 @ mm10
Exon Skipping
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91935081-91936565:-
Coord C1 exon
chr2:91936525-91936565
Coord A exon
chr2:91935822-91935961
Coord C2 exon
chr2:91935081-91935112
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCTAACCCCCTCCCCGACAGGAG
3' ss Score
8.01
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
CCACCACTGCCAGCCGCTTCTACAGGATCGACAGAGCCCAG
Seq A exon
GAGCACCTCAACTATGTGACGGAGATTGCCCAGGACGAGATTTACATCCTAGACCCAGAGCTTCTGGGAGCATCAGCCCGGCCTGACCTCCCCACCCCTACCTCCCCACTCCCTGCTTCCCCCTGCTCCCCTACACCCGG
Seq C2 exon
GTCAATGCAGGGGGACACTGCACTGCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.489 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000111303fB8737
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types