BtaEX6028852 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019980 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:101944435-101948404:-
Coord C1 exon
chr4:101948364-101948404
Coord A exon
chr4:101947340-101947467
Coord C2 exon
chr4:101944435-101944557
Length
128 bp
Sequences
Splice sites
3' ss Seq
GATTTCTTTTCCTTCCTTAGGAA
3' ss Score
10.91
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
CTACTTCTGCTGATCGCTTTTATCGAATAGACAGATCTCAG
Seq A exon
GAACATTTGCACTTTGTAATGGAGATTTCTCAAGATGAGATTTTTATTCTGGACCCAGATATGGTGTTGTCACAGCAGGCGGGAACACCGCCAGGAATGCCTGACCTGGTGGTGGAGCAAGCCTCGGG
Seq C2 exon
AATGACGGACTGGTGGAATCCTGCTCTCCGGAAACGCATGCTGAGCGACAGTGGGCTGGGGATGATAAGCCCGCATTATGAAGACTCGGATCTGAAAGATTTCAGCCACTCCCGAGTGCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019980-'34-33,'34-32,35-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.233 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTGCTGATCGCTTTTATCGA
R:
ACTCGGGAGTGGCTGAAATCT
Band lengths:
156-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]