RnoEX0027520 @ rn6
Exon Skipping
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64451679-64454470:-
Coord C1 exon
chr4:64454430-64454470
Coord A exon
chr4:64453404-64453531
Coord C2 exon
chr4:64451679-64451795
Length
128 bp
Sequences
Splice sites
3' ss Seq
GGCTTGCTTTTCTCCCTTAGGAA
3' ss Score
10.08
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CAACTTCTGCTGACCGCTTTTATCGAATAGACAGATCTCAG
Seq A exon
GAACATTTGCACTTTGTGATGGAGATTTCTCATGATGAGATTTTTATTCTGGACCCAGATATGGTGGTGTCACAGCAGGCAGGGACACCTCCAGGAATGCCAGACCTAGTGGTTGAACAGGCTTCTGG
Seq C2 exon
GCTGTCTGACTGGTGGAACCCTGCCCTGAGGAAACGTATGCTGAGTGACAGTGGGATGATCACACCCCACTATGAGGACTCAGATCTGAAAGACTTCAGCCACTCCAGAGTGCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705-'43-43,'43-42,44-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.256 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTGACCGCTTTTATCGA
R:
ACTCTGGAGTGGCTGAAGTCT
Band lengths:
147-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]