GgaEX6002519 @ galGal4
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr1:57746618-57749087:+
Coord C1 exon
chr1:57746618-57746658
Coord A exon
chr1:57748228-57748355
Coord C2 exon
chr1:57748962-57749087
Length
128 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTATCATTCCAACAGGAA
3' ss Score
10.45
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CAACTTCTGCTGATCGTTTTTACCGCATTGACAGATCTCAG
Seq A exon
GAACATTTGCACTTTGTGACGGAAATTTCGCAGGACGAGATTTTTATTCTGGACCCAGAGCTGGTAATGTCACAGCAGGGGGGGACGCCACCTGGAATGCCTGATCTGGTAGTGGAGCAGGCCTCTGG
Seq C2 exon
AATATCAGATCGGTGGAACCCTGCTGTTCGAAAGAGGATGCTGAGCGACAGTGGCCTTGGCAAGATTTCCCCACACTACGAGGTACCTGACAAACAAAAGGACGCCAGCCAGACCTATATACTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890-'38-30,'38-29,40-30=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.372 C2=0.256
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127962=Ank_2=PU(7.7=14.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCTGATCGTTTTTACCGC
R:
GCAGTATATAGGTCTGGCTGGC
Band lengths:
162-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]