MmuEX6003732 @ mm10
Exon Skipping
Gene
ENSMUSG00000038665 | Dgki
Description
diacylglycerol kinase, iota [Source:MGI Symbol;Acc:MGI:2443430]
Coordinates
chr6:36913633-36916461:-
Coord C1 exon
chr6:36916421-36916461
Coord A exon
chr6:36915382-36915509
Coord C2 exon
chr6:36913633-36913749
Length
128 bp
Sequences
Splice sites
3' ss Seq
GGCTTGTTTTCCTCCCTCAGGAA
3' ss Score
9.83
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CAACGTCTGCTGACCGCTTTTATCGAATAGACAGATCTCAG
Seq A exon
GAACATTTGCACTTTGTGATGGAGATTTCTCACGATGAAATTTTTATTCTGGACCCAGATATGGTGGTGTCACAGCAGGCAGGGACCCCTCCAGGAATGCCTGACCTGGTGGTTGAACAGGCTTCTGG
Seq C2 exon
GCTGTCTGACTGGTGGAACCCTGCCCTGAGGAAACGTATGCTGAGTGACAGTGGGATGATCACACCCCACTATGAGGACTCAGATCTGAAAGACTTCAGCCACTCCAGAGTGCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038665-'55-54,'55-52,56-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.249 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACGTCTGCTGACCGCTTTTA
R:
ACTCTGGAGTGGCTGAAGTCT
Band lengths:
151-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types